RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA565584", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 5 ✖

tax_phylum 1

  • Thermoproteota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565584 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28595389 28595389 PRJNA565584_P_NODE_127867_length_277_cov_1.132353_g126715_i0 PRJNA565584 127867 277 1.132353 3.13661781 Zestosphaera sp. 2303494 Archaea Archaea 49.3 1.78e-4   NR MEM1899556.1 2303494 g126715 i0 26.4 0.985559566787004 91 66 97.5 1 5 274 100 190 MEM1899556.1 phospholipase D-like domain-containing protein [Zestosphaera sp.] diamond 273 49.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Zestosphaera Zestosphaera sp.
28595468 28595468 PRJNA565584_P_NODE_211907_length_241_cov_2.380952_g210755_i0 PRJNA565584 211907 241 2.380952 5.73809432 Thermoproteota archaeon 2056631 Archaea Archaea 167 3.14e-49   NR MDQ3975236.1 2056631 g210755 i0 100 2.98755186721992 80 0 99.6 0 241 2 228 307 MDQ3975236.1 AsnC family transcriptional regulator [Thermoproteota archaeon] diamond 720 167 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30806178 30806178 PRJNA565584_P_NODE_53714_length_406_cov_0.921922_g52563_i0 PRJNA565584 53714 406 0.921922 3.74300332 Thermoproteota archaeon 2056631 Archaea Archaea 51.6 1.12e-4   NR MET1128772.1 2056631 g52563 i0 36.3 2.32758620689655 91 49 67.2 2 82 354 8 89 MET1128772.1 ribosome assembly factor SBDS [Thermoproteota archaeon] diamond 945 51.6 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31325352 31325352 PRJNA565584_P_NODE_221675_length_228_cov_2.258065_g220523_i0 PRJNA565584 221675 228 2.258065 5.1483882 Stenosarchaea group 2290931 Archaea Archaea 57.4 1.81e-7   NR NPA98738.1 2056631 g220523 i0 65.9 12.2631578947368 44 15 57.9 0 206 75 13 56 NPA98738.1 thermosome subunit [Thermoproteota archaeon] diamond 2796 57.4 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32324454 32324454 PRJNA565584_P_NODE_96179_length_305_cov_1.422414_g95027_i0 PRJNA565584 96179 305 1.422414 4.3383627 Candidatus Methanomethylicia archaeon 2268187 Archaea Archaea 64.3 8.58e-10   NR MEM0084208.1 2268187 g95027 i0 40.3 2.42950819672131 77 43 75.7 2 302 72 152 225 MEM0084208.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein [Candidatus Methanomethylicia archaeon] diamond 741 64.3 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia       Candidatus Methanomethylicia archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;