RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA565584" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565584 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29258066 29258066 PRJNA565584_P_NODE_178549_length_249_cov_0.875000_g177397_i0 PRJNA565584 178549 249 0.875 2.17875 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 163 5.08e-47   NR WP_299079381.1 1678694 g177397 i0 97.6 0.987951807228916 82 2 98.8 0 247 2 91 172 WP_299079381.1 sulfatase-like hydrolase/transferase [uncultured Fretibacterium sp.] diamond 246 163 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
29858148 29858148 PRJNA565584_P_NODE_168891_length_251_cov_0.865169_g167739_i0 PRJNA565584 168891 251 0.865169 2.17157419 Thermovirgaceae bacterium 3041276 Bacteria Bacteria 45.8 0.00337   NR MDO9509333.1 3041276 g167739 i0 42.9 1.50597609561753 56 30 66.9 1 246 79 371 424 MDO9509333.1 LssY C-terminal domain-containing protein [Thermovirgaceae bacterium] diamond 378 45.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Thermovirgaceae   Thermovirgaceae bacterium
31059235 31059235 PRJNA565584_P_NODE_57135_length_393_cov_1.678125_g55984_i0 PRJNA565584 57135 393 1.678125 6.59503125 Synergistaceae bacterium 2053624 Bacteria Bacteria 60.5 1.26e-7   NR NLD97735.1 2053624 g55984 i0 29.8 0.923664122137405 121 78 92.4 2 24 386 331 444 NLD97735.1 TIR domain-containing protein [Synergistaceae bacterium] diamond 363 60.5 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31438210 31438210 PRJNA565584_P_NODE_70436_length_354_cov_1.370107_g69285_i0 PRJNA565584 70436 354 1.370107 4.85017878 Synergistales bacterium 2268201 Bacteria Bacteria 61.6 3e-8   NR GHV54514.1 2268201 g69285 i0 39.8 1.75423728813559 108 58 91.5 3 11 334 41 141 GHV54514.1 hypothetical protein FACS1894216_14690 [Synergistales bacterium] diamond 621 61.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
31849352 31849352 PRJNA565584_P_NODE_173917_length_250_cov_0.870056_g172765_i0 PRJNA565584 173917 250 0.870056 2.17514 Synergistaceae bacterium 2053624 Bacteria Bacteria 55.5 1.37e-6   NR HOU32609.1 2053624 g172765 i0 44 3.024 84 43 97.2 3 4 246 218 300 HOU32609.1 AAA domain-containing protein [Synergistaceae bacterium] diamond 756 55.5 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32450948 32450948 PRJNA565584_P_NODE_88979_length_315_cov_1.272727_g87827_i0 PRJNA565584 88979 315 1.272727 4.00909005 Pyramidobacter sp. 1943581 Bacteria Bacteria 58.2 2.17e-7   NR MBP5211376.1 1943581 g87827 i0 39.8 0.933333333333333 98 57 91.4 1 28 315 19 116 MBP5211376.1 ankyrin repeat domain-containing protein [Pyramidobacter sp.] diamond 294 58.2 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Pyramidobacter Pyramidobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;