RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA565584" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565584 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1830895 1830895 PRJNA565584_P_NODE_160022_length_255_cov_3.384615_g158870_i0 PRJNA565584 160022 255 3.384615 8.63076825 Tobamovirus tabaci 3432891 Viruses Viruses 472 1.5e-128   NTclustered gi|1823692201|gb|MN186255.1| 12242 g158870 i0 100 100 255 0 100 0 1 255 685 431 Tobacco mosaic virus isolate Henan9-2-2017 CP, MP, 183K protein, and 130K protein genes, complete cds blastn 25500 472 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
3687042 3687042 PRJNA565584_P_NODE_96143_length_305_cov_1.650862_g94991_i0 PRJNA565584 96143 305 1.650862 5.0351291 root 1 Root_unresolved Root_unresolved 564 2.95e-156   NTclustered gi|5777741|emb|Z36974.2| 12295 g94991 i0 100 18.944262295082 305 0 100 0 1 305 892 1196 Tobacco rattle virus genes for coat protein, 28.7 kDa & 32.8 kDa proteins, genomic RNA blastn 5778 564 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobravirus Tobravirus tabaci
13308412 13308412 PRJNA565584_P_NODE_105791_length_291_cov_1.412844_g104639_i0 PRJNA565584 105791 291 1.412844 4.11137604 Hepacivirus hominis 3052230 Viruses Viruses 54.7 0.007   NTclustered gi|1152729060|gb|KY620690.1| 3052230 g104639 i0 100 0.0996563573883162 29 0 10 0 259 287 9592 9620 Hepacivirus hominis isolate sP189489 polyprotein gene, complete cds blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Hepacivirus Hepacivirus hominis
27395688 27395688 PRJNA565584_P_NODE_204783_length_243_cov_0.905882_g203631_i0 PRJNA565584 204783 243 0.905882 2.20129326 Plasmopara viticola lesion associated alpha-like virus 1 2692080 Viruses Viruses 126 1.6499999999999995e-31   NR QHD64749.1 2692080 g203631 i0 77.8 2 81 18 100 0 243 1 1614 1694 QHD64749.1 RdRp [Plasmopara viticola lesion associated alpha-like virus 1] diamond 486 126 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Plasmopara viticola lesion associated alpha-like virus 1
28374142 28374142 PRJNA565584_P_NODE_152206_length_261_cov_1.228723_g151054_i0 PRJNA565584 152206 261 1.228723 3.20696703 Benyviridae sp. 2808992 Viruses Viruses 45.4 0.00525   NR UNY47209.1 2808992 g151054 i0 36.8 0.781609195402299 68 42 77 1 221 21 519 586 UNY47209.1 MAG: ORF1 [Benyviridae sp.] diamond 204 45.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales Benyviridae   Benyviridae sp.
29794963 29794963 PRJNA565584_P_NODE_48051_length_430_cov_1.523810_g46900_i0 PRJNA565584 48051 430 1.52381 6.552383 Hepelivirales sp. 2809460 Viruses Viruses 107 6.22e-24   NR WAY16515.1 2809460 g46900 i0 44.3 0.851162790697674 122 65 85.1 1 367 2 20 138 WAY16515.1 hypothetical protein, partial [Hepelivirales sp.] diamond 366 107 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales     Hepelivirales sp.
30553242 30553242 PRJNA565584_P_NODE_65553_length_367_cov_1.306122_g64402_i0 PRJNA565584 65553 367 1.306122 4.79346774 Plasmopara viticola lesion associated alpha-like virus 1 2692080 Viruses Viruses 59.3 6.4e-8   NR QHD64750.1 2692080 g64402 i0 39.7 0.637602179836512 78 47 63.8 0 134 367 2 79 QHD64750.1 ORF2 [Plasmopara viticola lesion associated alpha-like virus 1] diamond 234 59.3 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Plasmopara viticola lesion associated alpha-like virus 1
31786041 31786041 PRJNA565584_P_NODE_75897_length_341_cov_1.291045_g74746_i0 PRJNA565584 75897 341 1.291045 4.40246345 Plasmopara viticola lesion associated alpha-like virus 1 2692080 Viruses Viruses 114 1.62e-29   NR QHD64750.1 2692080 g74746 i0 60 0.835777126099707 95 36 81.8 1 341 63 89 183 QHD64750.1 ORF2 [Plasmopara viticola lesion associated alpha-like virus 1] diamond 285 114 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae Alphavirus Plasmopara viticola lesion associated alpha-like virus 1
32639742 32639742 PRJNA565584_P_NODE_128500_length_276_cov_1.896552_g127348_i0 PRJNA565584 128500 276 1.896552 5.23448352 Hepelivirales sp. 2809460 Viruses Viruses 90.5 8.96e-19   NR WAY16520.1 2809460 g127348 i0 43.5 1 92 51 100 1 276 1 290 380 WAY16520.1 hypothetical protein [Hepelivirales sp.] diamond 276 90.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Hepelivirales     Hepelivirales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;