contig_metadata
56 rows where bioproject = "PRJNA565584", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1831491 | 1831491 | PRJNA565584_P_NODE_196182_length_245_cov_0.895349_g195030_i0 | PRJNA565584 | 196182 | 245 | 0.895349 | 2.19360505 | Gracilinema caldarium | 215591 | Bacteria | Bacteria | 97.1 | 3e-21 | NR | WP_013969729.1 | 215591 | g195030 | i0 | 55.6 | 4.93469387755102 | 81 | 36 | 99.2 | 0 | 243 | 1 | 870 | 950 | WP_013969729.1 ligand-binding sensor domain-containing diguanylate cyclase [Gracilinema caldarium] | diamond | 1209 | 97.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Breznakiellaceae | Gracilinema | Gracilinema caldarium | ||
| 5658388 | 5658388 | PRJNA565584_P_NODE_119445_length_282_cov_1.473684_g118293_i0 | PRJNA565584 | 119445 | 282 | 1.473684 | 4.15578888 | Leptospira mgodei | 3235172 | Bacteria | Bacteria | 516 | 7.67e-142 | NTclustered | gi|2777195838|gb|CP162139.1| | 3235172 | g118293 | i0 | 99.645 | 1 | 282 | 1 | 100 | 0 | 1 | 282 | 1824465 | 1824184 | Leptospira mgodei strain WS4.C2 chromosome 1, complete sequence | blastn | 282 | 516 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira mgodei | ||
| 5661668 | 5661668 | PRJNA565584_P_NODE_92485_length_310_cov_2.746835_g91333_i0 | PRJNA565584 | 92485 | 310 | 2.746835 | 8.5151885 | Treponema sp. Marseille-Q4132 | 2766701 | Bacteria | Bacteria | 464 | 3.14e-126 | NTclustered | gi|1897717435|gb|CP060591.1| | 2766701 | g91333 | i0 | 92.605 | 3.10322580645161 | 311 | 21 | 99 | 1 | 2 | 310 | 2464696 | 2465006 | Treponema sp. Marseille-Q4132 chromosome | blastn | 962 | 464 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. Marseille-Q4132 | ||
| 10062584 | 10062584 | PRJNA565584_P_NODE_146528_length_264_cov_2.204188_g145376_i0 | PRJNA565584 | 146528 | 264 | 2.204188 | 5.81905632 | Treponema | 157 | Bacteria | Bacteria | 466 | 7.27e-127 | NTclustered | gi|719625061|gb|CP009227.1| | 1539298 | g145376 | i0 | 98.485 | 12.9734848484848 | 264 | 4 | 100 | 0 | 1 | 264 | 1125897 | 1125634 | Treponema sp. OMZ 838, complete genome | blastn | 3425 | 466 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 838 | ||
| 10759308 | 10759308 | PRJNA565584_P_NODE_135489_length_272_cov_1.185930_g134337_i0 | PRJNA565584 | 135489 | 272 | 1.18593 | 3.2257296 | Leptospira cinconiae | 3235173 | Bacteria | Bacteria | 497 | 2.67e-136 | NTclustered | gi|2777192084|gb|CP162137.1| | 3235173 | g134337 | i0 | 99.632 | 1 | 272 | 1 | 100 | 0 | 1 | 272 | 1335280 | 1335009 | Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence | blastn | 272 | 497 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira cinconiae | ||
| 16437169 | 16437169 | PRJNA565584_P_NODE_196493_length_245_cov_0.895349_g195341_i0 | PRJNA565584 | 196493 | 245 | 0.895349 | 2.19360505 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 85.1 | 2.74e-17 | NR | MBX7059936.1 | 2604146 | g195341 | i0 | 50 | 1.98367346938776 | 78 | 36 | 91.8 | 1 | 244 | 20 | 272 | 349 | MBX7059936.1 catalase family protein [Leptospirales bacterium] | diamond | 486 | 85.9 | 0.990686845168801 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospirales bacterium | ||||
| 17132364 | 17132364 | PRJNA565584_P_NODE_123494_length_279_cov_2.733010_g122342_i0 | PRJNA565584 | 123494 | 279 | 2.73301 | 7.6250979 | Treponema vincentii | 69710 | Bacteria | Bacteria | 433 | 7.85e-117 | NTclustered | gi|2034589463|gb|CP050497.1| | 69710 | g122342 | i0 | 94.624 | 5 | 279 | 15 | 100 | 0 | 1 | 279 | 1181273 | 1181551 | Treponema vincentii strain OMZ 806 chromosome, complete genome | blastn | 1395 | 433 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 17712392 | 17712392 | PRJNA565584_P_NODE_196574_length_245_cov_0.895349_g195422_i0 | PRJNA565584 | 196574 | 245 | 0.895349 | 2.19360505 | Treponema | 157 | Bacteria | Bacteria | 147 | 9.86e-31 | NTclustered | gi|2265141765|gb|CP051199.1| | 2563664 | g195422 | i0 | 98.78 | 40.9836734693878 | 82 | 1 | 61 | 0 | 61 | 142 | 1330157 | 1330238 | Treponema sp. OMZ 788 chromosome, complete genome | blastn | 10041 | 147 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. OMZ 788 | ||
| 19682248 | 19682248 | PRJNA565584_P_NODE_183196_length_248_cov_0.880000_g182044_i0 | PRJNA565584 | 183196 | 248 | 0.88 | 2.1824 | Treponema vincentii | 69710 | Bacteria | Bacteria | 453 | 5.2600000000000005e-123 | NTclustered | gi|2265115921|gb|CP051153.1| | 69710 | g182044 | i0 | 99.597 | 5 | 248 | 1 | 100 | 0 | 1 | 248 | 2423206 | 2423453 | Treponema vincentii strain OMZ 862 chromosome, complete genome | blastn | 1240 | 453 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema vincentii | ||
| 26636229 | 26636229 | PRJNA565584_P_NODE_75921_length_341_cov_1.149254_g74770_i0 | PRJNA565584 | 75921 | 341 | 1.149254 | 3.91895614 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 44.7 | 0.0238 | NR | GHV25216.1 | 2053615 | g74770 | i0 | 31.8 | 0.967741935483871 | 110 | 68 | 90.6 | 1 | 322 | 14 | 263 | 372 | GHV25216.1 hypothetical protein FACS189498_3240 [Spirochaetia bacterium] | diamond | 330 | 44.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 26667561 | 26667561 | PRJNA565584_P_NODE_126261_length_278_cov_1.209756_g125109_i0 | PRJNA565584 | 126261 | 278 | 1.209756 | 3.36312168 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 144 | 1.2999999999999998e-38 | NR | GHV24167.1 | 2053615 | g125109 | i0 | 77.8 | 1.94244604316547 | 90 | 20 | 97.1 | 0 | 3 | 272 | 385 | 474 | GHV24167.1 capsular polysaccharide biosynthesis protein [Spirochaetia bacterium] | diamond | 540 | 144 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 26903388 | 26903388 | PRJNA565584_P_NODE_195941_length_245_cov_0.895349_g194789_i0 | PRJNA565584 | 195941 | 245 | 0.895349 | 2.19360505 | Pleomorphochaeta | 1920504 | Bacteria | Bacteria | 103 | 1.3399999999999999e-25 | NR | MDC7244240.1 | 1920505 | g194789 | i0 | 62.2 | 5.84081632653061 | 82 | 30 | 99.2 | 1 | 3 | 245 | 90 | 171 | MDC7244240.1 phosphoribosyltransferase [Pleomorphochaeta sp.] | diamond | 1431 | 103 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Pleomorphochaeta | Pleomorphochaeta sp. | ||
| 27205501 | 27205501 | PRJNA565584_P_NODE_135562_length_272_cov_1.160804_g134410_i0 | PRJNA565584 | 135562 | 272 | 1.160804 | 3.15738688 | Spirochaetaceae bacterium | 1898206 | Bacteria | Bacteria | 102 | 3.25e-23 | NR | MDA3852253.1 | 1898206 | g134410 | i0 | 60.5 | 2.93382352941176 | 86 | 31 | 94.9 | 2 | 13 | 270 | 73 | 155 | MDA3852253.1 asparagine--tRNA ligase [Spirochaetaceae bacterium] | diamond | 798 | 102 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaetaceae bacterium | |||
| 27458724 | 27458724 | PRJNA565584_P_NODE_124043_length_279_cov_1.495146_g122891_i0 | PRJNA565584 | 124043 | 279 | 1.495146 | 4.17145734 | Treponema sp. | 166 | Bacteria | Bacteria | 51.2 | 5.79e-5 | NR | MBS7294236.1 | 166 | g122891 | i0 | 34.2 | 0.817204301075269 | 76 | 48 | 79.6 | 2 | 230 | 9 | 351 | 426 | MBS7294236.1 hypothetical protein [Treponema sp.] | diamond | 228 | 51.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 27616589 | 27616589 | PRJNA565584_P_NODE_200104_length_244_cov_0.900585_g198952_i0 | PRJNA565584 | 200104 | 244 | 0.900585 | 2.1974274 | Treponema sp. | 166 | Bacteria | Bacteria | 73.6 | 4.68e-13 | NR | MCL2478242.1 | 166 | g198952 | i0 | 44 | 0.922131147540984 | 75 | 42 | 92.2 | 0 | 239 | 15 | 180 | 254 | MCL2478242.1 hypothetical protein [Treponema sp.] | diamond | 225 | 73.6 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 27679958 | 27679958 | PRJNA565584_P_NODE_195384_length_245_cov_0.895349_g194232_i0 | PRJNA565584 | 195384 | 245 | 0.895349 | 2.19360505 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 60.8 | 1.52e-8 | NR | MDH5680916.1 | 2202144 | g194232 | i0 | 55.3 | 0.575510204081633 | 47 | 21 | 57.6 | 0 | 3 | 143 | 48 | 94 | MDH5680916.1 phosphoglucosamine mutase [Spirochaetota bacterium] | diamond | 141 | 60.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 27756729 | 27756729 | PRJNA565584_P_NODE_53404_length_407_cov_1.383234_g52253_i0 | PRJNA565584 | 53404 | 407 | 1.383234 | 5.62976238 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 60.8 | 9.77e-8 | NR | MBU45438.1 | 1898206 | g52253 | i0 | 39.3 | 3.90663390663391 | 89 | 46 | 60.4 | 4 | 4 | 249 | 289 | 376 | MBU45438.1 NADP-dependent succinic semialdehyde dehydrogenase [Spirochaetaceae bacterium] | diamond | 1590 | 60.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaetaceae bacterium | |||
| 27837356 | 27837356 | PRJNA565584_P_NODE_208664_length_242_cov_0.911243_g207512_i0 | PRJNA565584 | 208664 | 242 | 0.911243 | 2.20520806 | Treponema phagedenis | 162 | Bacteria | Bacteria | 122 | 3.02e-31 | NR | WP_024753216.1 | 162 | g207512 | i0 | 73.4 | 0.979338842975207 | 79 | 20 | 96.7 | 1 | 6 | 239 | 296 | 374 | WP_024753216.1 alanine racemase [Treponema phagedenis] | diamond | 237 | 122 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema phagedenis | ||
| 28121764 | 28121764 | PRJNA565584_P_NODE_97525_length_303_cov_0.995652_g96373_i0 | PRJNA565584 | 97525 | 303 | 0.995652 | 3.01682556 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 108 | 2.99e-25 | NR | MBT3272796.1 | 2026792 | g96373 | i0 | 53 | 10.1683168316832 | 100 | 44 | 96 | 2 | 301 | 11 | 317 | 416 | MBT3272796.1 CotH kinase family protein [Spirochaetales bacterium] | diamond | 3081 | 108 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 28293111 | 28293111 | PRJNA565584_P_NODE_39606_length_477_cov_1.363861_g38455_i0 | PRJNA565584 | 39606 | 477 | 1.363861 | 6.50561697 | Bacteria | 2 | Bacteria | Bacteria | 50.8 | 2.92e-4 | NR | MDR0554012.1 | 166 | g38455 | i0 | 29.4 | 3.57861635220126 | 136 | 82 | 81.8 | 3 | 466 | 77 | 13 | 140 | MDR0554012.1 rhomboid family intramembrane serine protease [Treponema sp.] | diamond | 1707 | 51.2 | 0.9921875 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 28532291 | 28532291 | PRJNA565584_P_NODE_190947_length_246_cov_0.890173_g189795_i0 | PRJNA565584 | 190947 | 246 | 0.890173 | 2.18982558 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 61.2 | 1.11e-8 | NR | MBK8398112.1 | 2026757 | g189795 | i0 | 40.2 | 2.80487804878049 | 82 | 45 | 100 | 2 | 246 | 1 | 171 | 248 | MBK8398112.1 alpha/beta fold hydrolase [Leptospiraceae bacterium] | diamond | 690 | 61.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 28595485 | 28595485 | PRJNA565584_P_NODE_27687_length_586_cov_2.157895_g26546_i0 | PRJNA565584 | 27687 | 586 | 2.157895 | 12.6452647 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 63.5 | 2.14e-8 | NR | MBN2874962.1 | 2026792 | g26546 | i0 | 57.4 | 0.486348122866894 | 47 | 20 | 24.1 | 0 | 393 | 533 | 181 | 227 | MBN2874962.1 CAP domain-containing protein [Spirochaetales bacterium] | diamond | 285 | 63.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 28595499 | 28595499 | PRJNA565584_P_NODE_49907_length_421_cov_1.767241_g48756_i0 | PRJNA565584 | 49907 | 421 | 1.767241 | 7.44008461 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 65.9 | 4.23e-10 | NR | HSA14422.1 | 2202144 | g48756 | i0 | 32.1 | 1.94536817102138 | 137 | 85 | 97.6 | 3 | 412 | 2 | 41 | 169 | HSA14422.1 hypothetical protein [Spirochaetota bacterium] | diamond | 819 | 65.9 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 28627080 | 28627080 | PRJNA565584_P_NODE_197587_length_245_cov_0.895349_g196435_i0 | PRJNA565584 | 197587 | 245 | 0.895349 | 2.19360505 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 67.8 | 5.71e-11 | NR | GHV80811.1 | 2053615 | g196435 | i0 | 47.3 | 1.91020408163265 | 74 | 37 | 90.6 | 1 | 238 | 17 | 410 | 481 | GHV80811.1 hypothetical protein AGMMS49944_26020 [Spirochaetia bacterium] | diamond | 468 | 67.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 28690167 | 28690167 | PRJNA565584_P_NODE_142467_length_267_cov_1.587629_g141315_i0 | PRJNA565584 | 142467 | 267 | 1.587629 | 4.23896943 | Candidatus Ornithospirochaeta stercorigallinarum | 2840898 | Bacteria | Bacteria | 123 | 1.9e-31 | NR | HIS14517.1 | 2840898 | g141315 | i0 | 97.1 | 0.764044943820225 | 68 | 2 | 76.4 | 0 | 3 | 206 | 305 | 372 | HIS14517.1 patatin-like phospholipase family protein [Candidatus Ornithospirochaeta stercorigallinarum] | diamond | 204 | 123 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Candidatus Ornithospirochaeta | Candidatus Ornithospirochaeta stercorigallinarum | ||
| 28766788 | 28766788 | PRJNA565584_P_NODE_7607_length_1230_cov_4.222126_g6902_i0 | PRJNA565584 | 7607 | 1230 | 4.222126 | 51.9321498 | Treponema | 157 | Bacteria | Bacteria | 84 | 3.13e-14 | NR | MDR2632347.1 | 166 | g6902 | i0 | 27.5 | 1.84634146341463 | 193 | 116 | 43.2 | 5 | 1186 | 656 | 80 | 264 | MDR2632347.1 CAP domain-containing protein [Treponema sp.] | diamond | 2271 | 84.3 | 0.99644128113879 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 28910788 | 28910788 | PRJNA565584_P_NODE_60708_length_381_cov_1.996753_g59557_i0 | PRJNA565584 | 60708 | 381 | 1.996753 | 7.60762893 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 57 | 4.22e-8 | NR | MCB1177358.1 | 2026757 | g59557 | i0 | 49.1 | 0.417322834645669 | 53 | 26 | 40.9 | 1 | 163 | 8 | 1 | 53 | MCB1177358.1 hypothetical protein [Leptospiraceae bacterium] | diamond | 159 | 57 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium | |||
| 28942888 | 28942888 | PRJNA565584_P_NODE_204528_length_243_cov_0.905882_g203376_i0 | PRJNA565584 | 204528 | 243 | 0.905882 | 2.20129326 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 126 | 1.08e-31 | NR | HUI71271.1 | 2053615 | g203376 | i0 | 66.3 | 1.97530864197531 | 80 | 27 | 98.8 | 0 | 1 | 240 | 88 | 167 | HUI71271.1 hypothetical protein [Spirochaetia bacterium] | diamond | 480 | 126 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 29069013 | 29069013 | PRJNA565584_P_NODE_143288_length_266_cov_3.373057_g142136_i0 | PRJNA565584 | 143288 | 266 | 3.373057 | 8.97233162 | Spirochaetae bacterium HGW-Spirochaetae-3 | 2013835 | Bacteria | Bacteria | 45.1 | 0.00745 | NR | PKL23071.1 | 2013835 | g142136 | i0 | 35.3 | 0.958646616541353 | 85 | 48 | 95.9 | 1 | 256 | 2 | 27 | 104 | PKL23071.1 MAG: hypothetical protein CVV47_16305 [Spirochaetae bacterium HGW-Spirochaetae-3] | diamond | 255 | 45.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetae bacterium HGW-Spirochaetae-3 | ||||||
| 29082690 | 29082690 | PRJNA565584_P_NODE_70928_length_353_cov_1.100000_g69777_i0 | PRJNA565584 | 70928 | 353 | 1.1 | 3.883 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 54.3 | 2.53e-6 | NR | WP_272532658.1 | 1513297 | g69777 | i0 | 34.5 | 1.47875354107649 | 87 | 55 | 73.1 | 2 | 298 | 41 | 17 | 102 | WP_272532658.1 hypothetical protein [Leptospira sp. GIMC2001] | diamond | 522 | 54.7 | 0.992687385740402 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira sp. GIMC2001 | ||
| 29384732 | 29384732 | PRJNA565584_P_NODE_186949_length_247_cov_0.885057_g185797_i0 | PRJNA565584 | 186949 | 247 | 0.885057 | 2.18609079 | Candidatus Treponema excrementipullorum | 2838768 | Bacteria | Bacteria | 181 | 2.6499999999999998e-52 | NR | MBU3849231.1 | 2838768 | g185797 | i0 | 100 | 0.983805668016194 | 81 | 0 | 98.4 | 0 | 245 | 3 | 146 | 226 | MBU3849231.1 asparagine synthase B [Candidatus Treponema excrementipullorum] | diamond | 243 | 181 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Candidatus Treponema excrementipullorum | ||
| 29461126 | 29461126 | PRJNA565584_P_NODE_133290_length_273_cov_1.540000_g132138_i0 | PRJNA565584 | 133290 | 273 | 1.54 | 4.2042 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 80.1 | 4.19e-16 | NR | MDR3341879.1 | 166 | g132138 | i0 | 44.9 | 3.68131868131868 | 89 | 49 | 97.8 | 0 | 5 | 271 | 78 | 166 | MDR3341879.1 CAP domain-containing protein [Treponema sp.] | diamond | 1005 | 80.5 | 0.995031055900621 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 29573907 | 29573907 | PRJNA565584_P_NODE_50550_length_418_cov_2.234783_g49399_i0 | PRJNA565584 | 50550 | 418 | 2.234783 | 9.34139294 | Oceanispirochaeta crateris | 2518645 | Bacteria | Bacteria | 71.2 | 2.65e-11 | NR | WP_149486566.1 | 2518645 | g49399 | i0 | 37.3 | 1.01913875598086 | 142 | 76 | 98.3 | 4 | 416 | 6 | 161 | 294 | WP_149486566.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Oceanispirochaeta crateris] | diamond | 426 | 71.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Oceanispirochaeta | Oceanispirochaeta crateris | ||
| 29618918 | 29618918 | PRJNA565584_P_NODE_124850_length_279_cov_1.116505_g123698_i0 | PRJNA565584 | 124850 | 279 | 1.116505 | 3.11504895 | Treponema | 157 | Bacteria | Bacteria | 65.1 | 7.84e-10 | NR | MDR2951739.1 | 166 | g123698 | i0 | 37 | 5.90322580645161 | 92 | 54 | 98.9 | 1 | 4 | 279 | 368 | 455 | MDR2951739.1 caspase family protein [Treponema sp.] | diamond | 1647 | 65.5 | 0.993893129770992 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 29636896 | 29636896 | PRJNA565584_P_NODE_58730_length_388_cov_0.977778_g57579_i0 | PRJNA565584 | 58730 | 388 | 0.977778 | 3.79377864 | Sphaerochaetaceae bacterium | 2791017 | Bacteria | Bacteria | 170 | 1.9899999999999995e-47 | NR | MFA7188483.1 | 2791017 | g57579 | i0 | 88.4 | 0.734536082474227 | 95 | 11 | 73.5 | 0 | 102 | 386 | 1 | 95 | MFA7188483.1 hypothetical protein [Sphaerochaetaceae bacterium] | diamond | 285 | 170 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaetaceae bacterium | |||
| 29713637 | 29713637 | PRJNA565584_P_NODE_11650_length_980_cov_1.143330_g10690_i0 | PRJNA565584 | 11650 | 980 | 1.14333 | 11.204634 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 148 | 1.17e-37 | NR | WP_135766052.1 | 2484901 | g10690 | i0 | 30.1 | 5.76428571428571 | 322 | 178 | 86.6 | 7 | 867 | 19 | 29 | 342 | WP_135766052.1 catalase family protein [Leptospira ilyithenensis] | diamond | 5649 | 148 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira ilyithenensis | ||
| 29731636 | 29731636 | PRJNA565584_P_NODE_132190_length_274_cov_1.328358_g131038_i0 | PRJNA565584 | 132190 | 274 | 1.328358 | 3.63970092 | Spirochaetes bacterium GWB1_59_5 | 1802176 | Bacteria | Bacteria | 58.9 | 4.21e-8 | NR | OHD18884.1 | 1802176 | g131038 | i0 | 42.5 | 2.9014598540146 | 87 | 48 | 93.1 | 1 | 259 | 5 | 66 | 152 | OHD18884.1 MAG: hypothetical protein A2Y38_14560 [Spirochaetes bacterium GWB1_59_5] | diamond | 795 | 58.9 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetes bacterium GWB1_59_5 | ||||||
| 30079283 | 30079283 | PRJNA565584_P_NODE_39232_length_479_cov_2.985222_g38081_i0 | PRJNA565584 | 39232 | 479 | 2.985222 | 14.29921338 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 85.1 | 1.31e-17 | NR | MDH5656459.1 | 2053615 | g38081 | i0 | 68.5 | 0.338204592901879 | 54 | 17 | 33.8 | 0 | 317 | 478 | 19 | 72 | MDH5656459.1 50S ribosomal protein L13 [Spirochaetia bacterium] | diamond | 162 | 85.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 30142161 | 30142161 | PRJNA565584_P_NODE_145592_length_265_cov_1.598958_g144440_i0 | PRJNA565584 | 145592 | 265 | 1.598958 | 4.2372387 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 112 | 1.88e-27 | NR | HKJ85084.1 | 2053615 | g144440 | i0 | 56.8 | 0.99622641509434 | 88 | 37 | 99.6 | 1 | 265 | 2 | 213 | 299 | HKJ85084.1 hypothetical protein [Spirochaetia bacterium] | diamond | 264 | 112 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 30174164 | 30174164 | PRJNA565584_P_NODE_57852_length_391_cov_0.952830_g56701_i0 | PRJNA565584 | 57852 | 391 | 0.95283 | 3.7255653 | Turneriella parva | 29510 | Bacteria | Bacteria | 232 | 5.7899999999999996e-74 | NR | WP_014802630.1 | 29510 | g56701 | i0 | 77.3 | 2.9079283887468 | 128 | 29 | 98.2 | 0 | 389 | 6 | 148 | 275 | WP_014802630.1 hypothetical protein [Turneriella parva] | diamond | 1137 | 232 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Turneriella | Turneriella parva | ||
| 30314759 | 30314759 | PRJNA565584_P_NODE_28052_length_581_cov_1.921260_g26909_i0 | PRJNA565584 | 28052 | 581 | 1.92126 | 11.1625206 | root | 1 | Root_unresolved | Root_unresolved | 70.9 | 4.18e-11 | NR | MCL2480986.1 | 1898206 | g26909 | i0 | 34.9 | 7.46127366609294 | 106 | 64 | 54.7 | 1 | 1 | 318 | 115 | 215 | MCL2480986.1 30S ribosomal protein S3 [Spirochaetaceae bacterium] | diamond | 4335 | 70.9 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaetaceae bacterium | |||
| 30900954 | 30900954 | PRJNA565584_P_NODE_154754_length_259_cov_1.650538_g153602_i0 | PRJNA565584 | 154754 | 259 | 1.650538 | 4.27489342 | Treponema sp. | 166 | Bacteria | Bacteria | 42.7 | 0.04 | NR | MDA8424982.1 | 166 | g153602 | i0 | 32.1 | 0.972972972972973 | 84 | 55 | 96.1 | 2 | 4 | 252 | 24 | 106 | MDA8424982.1 hypothetical protein [Treponema sp.] | diamond | 252 | 42.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 30995802 | 30995802 | PRJNA565584_P_NODE_72514_length_349_cov_1.126812_g71363_i0 | PRJNA565584 | 72514 | 349 | 1.126812 | 3.93257388 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 51.2 | 1.28e-4 | NR | MCE9599478.1 | 2053615 | g71363 | i0 | 36.1 | 0.713467048710602 | 83 | 48 | 71.3 | 1 | 98 | 346 | 6 | 83 | MCE9599478.1 aldo/keto reductase [Spirochaetia bacterium] | diamond | 249 | 51.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 31311598 | 31311598 | PRJNA565584_P_NODE_161355_length_255_cov_1.076923_g160203_i0 | PRJNA565584 | 161355 | 255 | 1.076923 | 2.74615365 | Treponema sp. | 166 | Bacteria | Bacteria | 68.6 | 3.41e-11 | NR | MCR5623533.1 | 166 | g160203 | i0 | 47.2 | 0.847058823529412 | 72 | 38 | 84.7 | 0 | 10 | 225 | 72 | 143 | MCR5623533.1 hypothetical protein [Treponema sp.] | diamond | 216 | 68.6 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 31641593 | 31641593 | PRJNA565584_P_NODE_64936_length_368_cov_3.393220_g63785_i0 | PRJNA565584 | 64936 | 368 | 3.39322 | 12.4870496 | Treponema | 157 | Bacteria | Bacteria | 67.8 | 9.66e-11 | NR | MBR4374040.1 | 166 | g63785 | i0 | 48.3 | 0.978260869565217 | 60 | 31 | 48.9 | 0 | 2 | 181 | 187 | 246 | MBR4374040.1 CAP domain-containing protein [Treponema sp.] | diamond | 360 | 67.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 31785927 | 31785927 | PRJNA565584_P_NODE_142577_length_267_cov_1.561856_g141425_i0 | PRJNA565584 | 142577 | 267 | 1.561856 | 4.17015552 | Spirochaetae bacterium HGW-Spirochaetae-3 | 2013835 | Bacteria | Bacteria | 153 | 5.07e-44 | NR | PKL23227.1 | 2013835 | g141425 | i0 | 87.6 | 1 | 89 | 11 | 100 | 0 | 267 | 1 | 146 | 234 | PKL23227.1 MAG: molybdopterin dehydrogenase [Spirochaetae bacterium HGW-Spirochaetae-3] | diamond | 267 | 153 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetae bacterium HGW-Spirochaetae-3 | ||||||
| 31894707 | 31894707 | PRJNA565584_P_NODE_156537_length_258_cov_1.432432_g155385_i0 | PRJNA565584 | 156537 | 258 | 1.432432 | 3.69567456 | Bacteria | 2 | Bacteria | Bacteria | 47.4 | 0.00102 | NR | MDR1252473.1 | 166 | g155385 | i0 | 59.5 | 2.18604651162791 | 37 | 15 | 43 | 0 | 14 | 124 | 131 | 167 | MDR1252473.1 fibronectin type III domain-containing protein [Treponema sp.] | diamond | 564 | 47.8 | 0.99163179916318 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 32052932 | 32052932 | PRJNA565584_P_NODE_204738_length_243_cov_0.905882_g203586_i0 | PRJNA565584 | 204738 | 243 | 0.905882 | 2.20129326 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 47 | 7.87e-4 | NR | MCI1208542.1 | 166 | g203586 | i0 | 43.4 | 3.20987654320988 | 53 | 30 | 65.4 | 0 | 7 | 165 | 143 | 195 | MCI1208542.1 ATP-dependent Clp protease proteolytic subunit [Treponema sp.] | diamond | 780 | 47.4 | 0.991561181434599 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 32070869 | 32070869 | PRJNA565584_P_NODE_172938_length_250_cov_0.870056_g171786_i0 | PRJNA565584 | 172938 | 250 | 0.870056 | 2.17514 | Treponema sp. | 166 | Bacteria | Bacteria | 118 | 7.17e-29 | NR | MEL3907153.1 | 166 | g171786 | i0 | 69.9 | 0.996 | 83 | 25 | 99.6 | 0 | 1 | 249 | 64 | 146 | MEL3907153.1 methyl-accepting chemotaxis protein [Treponema sp.] | diamond | 249 | 118 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 32134212 | 32134212 | PRJNA565584_P_NODE_113858_length_286_cov_1.084507_g112706_i0 | PRJNA565584 | 113858 | 286 | 1.084507 | 3.10169002 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 43.1 | 0.0242 | NR | MEM7181493.1 | 2202144 | g112706 | i0 | 32.4 | 0.713286713286713 | 68 | 34 | 58.7 | 2 | 285 | 118 | 88 | 155 | MEM7181493.1 hypothetical protein [Spirochaetota bacterium] | diamond | 204 | 43.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 32197529 | 32197529 | PRJNA565584_P_NODE_185858_length_247_cov_1.132184_g184706_i0 | PRJNA565584 | 185858 | 247 | 1.132184 | 2.79649448 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 104 | 9.76e-25 | NR | MBN1697184.1 | 2026792 | g184706 | i0 | 56.6 | 10.9068825910931 | 76 | 33 | 92.3 | 0 | 229 | 2 | 20 | 95 | MBN1697184.1 paraslipin [Spirochaetales bacterium] | diamond | 2694 | 104 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 32356011 | 32356011 | PRJNA565584_P_NODE_66239_length_365_cov_1.335616_g65088_i0 | PRJNA565584 | 66239 | 365 | 1.335616 | 4.8749984 | Brachyspira intermedia | 84377 | Bacteria | Bacteria | 45.8 | 0.0098 | NR | WP_300741451.1 | 84377 | g65088 | i0 | 47.9 | 0.764383561643836 | 48 | 24 | 39.5 | 1 | 210 | 353 | 20 | 66 | WP_300741451.1 ankyrin repeat domain-containing protein [Brachyspira intermedia] | diamond | 279 | 45.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira intermedia | ||
| 32419076 | 32419076 | PRJNA565584_P_NODE_220259_length_231_cov_2.689873_g219107_i0 | PRJNA565584 | 220259 | 231 | 2.689873 | 6.21360663 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 124 | 8.35e-33 | NR | HPJ41256.1 | 2202144 | g219107 | i0 | 81.1 | 0.961038961038961 | 74 | 14 | 96.1 | 0 | 224 | 3 | 178 | 251 | HPJ41256.1 hypothetical protein [Spirochaetota bacterium] | diamond | 222 | 124 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 32450953 | 32450953 | PRJNA565584_P_NODE_96679_length_304_cov_1.666667_g95527_i0 | PRJNA565584 | 96679 | 304 | 1.666667 | 5.06666768 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 47.8 | 1.97e-4 | NR | MFO7729640.1 | 2053615 | g95527 | i0 | 92.9 | 0.276315789473684 | 28 | 0 | 27.6 | 1 | 86 | 3 | 8 | 33 | MFO7729640.1 hypothetical protein [Spirochaetia bacterium] | diamond | 84 | 47.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 32765980 | 32765980 | PRJNA565584_P_NODE_214140_length_241_cov_0.916667_g212988_i0 | PRJNA565584 | 214140 | 241 | 0.916667 | 2.20916747 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 42 | 0.0296 | NR | MCX7040941.1 | 2202144 | g212988 | i0 | 27.4 | 0.908713692946058 | 73 | 53 | 90.9 | 0 | 220 | 2 | 26 | 98 | MCX7040941.1 type II toxin-antitoxin system RelE/ParE family toxin [Spirochaetota bacterium] | diamond | 219 | 42 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 32891935 | 32891935 | PRJNA565584_P_NODE_87500_length_318_cov_0.844898_g86348_i0 | PRJNA565584 | 87500 | 318 | 0.844898 | 2.68677564 | Leptospiraceae bacterium | 2026757 | Bacteria | Bacteria | 52 | 4.22e-5 | NR | MBK8398971.1 | 2026757 | g86348 | i0 | 30.6 | 2.83962264150943 | 85 | 54 | 77.4 | 2 | 299 | 54 | 211 | 293 | MBK8398971.1 hypothetical protein [Leptospiraceae bacterium] | diamond | 903 | 52 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospiraceae bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;