RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA565584", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA565584 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5660332 5660332 PRJNA565584_P_NODE_24965_length_622_cov_12.785064_g23831_i0 PRJNA565584 24965 622 12.785064 79.52309808 Lentivirus humimdef1 3418650 Viruses Viruses 65.8 7.93e-6   NTclustered gi|37701115|gb|AY397046.1| 11676 g23831 i0 97.368 2.06752411575563 38 1 6 0 176 213 334 297 HIV-1 strain A|A15 from Ghana gag protein (gag) gene, partial cds blastn 1286 65.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
22233869 22233869 PRJNA565584_P_NODE_35978_length_504_cov_2.194896_g34827_i0 PRJNA565584 35978 504 2.194896 11.06227584 Badnavirus maculapiperis 3048272 Viruses Viruses 560 6.62e-155   NTclustered gi|1435073452|gb|MF996374.1| 262957 g34827 i0 94.355 5.60714285714286 372 9 99 1 129 500 1 360 Piper yellow mottle virus isolate WC2, complete genome blastn 2826 560 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus maculapiperis
29605235 29605235 PRJNA565584_P_NODE_109910_length_288_cov_1.432558_g108758_i0 PRJNA565584 109910 288 1.432558 4.12576704 Halyomorpha halys erranti-like virus 1 2950329 Viruses Viruses 127 1.15e-31   NR URQ09129.1 2950329 g108758 i0 69.8 1 96 28 99 1 286 2 581 676 URQ09129.1 replicase [Halyomorpha halys erranti-like virus 1] diamond 288 127 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Metaviridae   Halyomorpha halys erranti-like virus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;