RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA565584", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 13 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 13 ✖

bioproject 1

  • PRJNA565584 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12614534 12614534 PRJNA565584_P_NODE_85750_length_321_cov_1.241935_g84598_i0 PRJNA565584 85750 321 1.241935 3.98661135 Archaea 2157 Archaea Archaea 69.4 2.99e-7   NTclustered gi|2874253858|emb|OY969914.1| 176233 g84598 i0 84.722 47.1028037383178 72 7 22 4 219 288 2030610 2030679 MAG: uncultured Methanobacteriaceae archaeon isolate MFD02416.bin.1.248 genome assembly, chromosome: 1 blastn 15120 69.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
20957652 20957652 PRJNA565584_P_NODE_163897_length_253_cov_1.505556_g162745_i0 PRJNA565584 163897 253 1.505556 3.80905668 Methanocaldococcus infernus 67760 Archaea Archaea 52.8 0.023   NTclustered gi|295433502|gb|CP002009.1| 573063 g162745 i0 100 0.110671936758893 28 0 11 0 75 102 977082 977109 Methanocaldococcus infernus ME, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus infernus
27427305 27427305 PRJNA565584_P_NODE_45743_length_441_cov_2.103261_g44592_i0 PRJNA565584 45743 441 2.103261 9.27538101 Methanosphaera sp. 2666342 Archaea Archaea 47.8 0.00413   NR MEE3325674.1 2666342 g44592 i0 53.8 0.26530612244898 39 15 26.5 1 323 439 67 102 MEE3325674.1 phospholipid scramblase-related protein [Methanosphaera sp.] diamond 117 47.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
27566908 27566908 PRJNA565584_P_NODE_34264_length_518_cov_1.507865_g33113_i0 PRJNA565584 34264 518 1.507865 7.8107407 root 1 Root_unresolved Root_unresolved 315 1.1599999999999999e-104   NR MBR0369318.1 66852 g33113 i0 88.4 1.99227799227799 172 20 99.6 0 517 2 132 303 MBR0369318.1 hypothetical protein [Methanobrevibacter sp.] diamond 1032 315 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27977433 27977433 PRJNA565584_P_NODE_217605_length_237_cov_3.518293_g216453_i0 PRJNA565584 217605 237 3.518293 8.33835441 root 1 Root_unresolved Root_unresolved 102 5.78e-24   NR MBO6123194.1 66852 g216453 i0 57.1 25.5189873417722 77 33 97.5 0 5 235 11 87 MBO6123194.1 glycosyltransferase family 2 protein [Methanobrevibacter sp.] diamond 6048 102 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29542474 29542474 PRJNA565584_P_NODE_89730_length_313_cov_3.208333_g88578_i0 PRJNA565584 89730 313 3.208333 10.04208229 Methanobrevibacter sp. 66852 Archaea Archaea 43.5 0.0461   NR WP_330047862.1 66852 g88578 i0 27.6 1.00638977635783 105 72 96.8 2 10 312 217 321 WP_330047862.1 bifunctional glycosyltransferase/CDP-glycerol:glycerophosphate glycerophosphotransferase [Methanobrevibacter sp.] diamond 315 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29763407 29763407 PRJNA565584_P_NODE_70891_length_353_cov_1.189286_g69740_i0 PRJNA565584 70891 353 1.189286 4.19817958 Methanobrevibacter sp. 66852 Archaea Archaea 103 9.91e-24   NR MEE3444316.1 66852 g69740 i0 42.5 2.03966005665722 120 66 99.4 2 352 2 170 289 MEE3444316.1 C1 family peptidase [Methanobrevibacter sp.] diamond 720 103 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30110934 30110934 PRJNA565584_P_NODE_165392_length_252_cov_1.435754_g164240_i0 PRJNA565584 165392 252 1.435754 3.61810008 Methanosphaera sp. 2666342 Archaea Archaea 139 1.72e-37   NR MEE3417719.1 2666342 g164240 i0 79.5 0.988095238095238 83 17 98.8 0 251 3 40 122 MEE3417719.1 T4 RnlA family RNA ligase [Methanosphaera sp.] diamond 249 139 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
30142132 30142132 PRJNA565584_P_NODE_107292_length_290_cov_1.179724_g106140_i0 PRJNA565584 107292 290 1.179724 3.4211996 Methanosphaera sp. 2666342 Archaea Archaea 138 5.78e-37   NR MEE3417719.1 2666342 g106140 i0 69.8 0.993103448275862 96 29 99.3 0 1 288 186 281 MEE3417719.1 T4 RnlA family RNA ligase [Methanosphaera sp.] diamond 288 138 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
31279992 31279992 PRJNA565584_P_NODE_177255_length_249_cov_0.875000_g176103_i0 PRJNA565584 177255 249 0.875 2.17875 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 45.4 0.00442   NR WP_296809049.1 253161 g176103 i0 46.8 0.566265060240964 47 25 56.6 0 30 170 173 219 WP_296809049.1 hypothetical protein, partial [uncultured Methanobrevibacter sp.] diamond 141 45.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
31673229 31673229 PRJNA565584_P_NODE_141137_length_268_cov_1.471795_g139985_i0 PRJNA565584 141137 268 1.471795 3.9444106 root 1 Root_unresolved Root_unresolved 82.8 3.29e-17   NR MBR3140274.1 66852 g139985 i0 51.6 3.85074626865672 93 38 96.3 3 258 1 17 109 MBR3140274.1 class I SAM-dependent methyltransferase [Methanobrevibacter sp.] diamond 1032 83.6 0.990430622009569 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31691166 31691166 PRJNA565584_P_NODE_105857_length_291_cov_1.394495_g104705_i0 PRJNA565584 105857 291 1.394495 4.05798045 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 62.4 8.1e-9   NR WP_295614768.1 253161 g104705 i0 59.1 1.38144329896907 44 18 45.4 0 2 133 777 820 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 402 62.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32734671 32734671 PRJNA565584_P_NODE_152920_length_260_cov_1.780749_g151768_i0 PRJNA565584 152920 260 1.780749 4.6299474 Methanobrevibacter sp. 66852 Archaea Archaea 80.1 1.2e-17   NR MBR0369331.1 66852 g151768 i0 59.7 0.773076923076923 67 27 77.3 0 235 35 3 69 MBR0369331.1 hypothetical protein [Methanobrevibacter sp.] diamond 201 80.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;