RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA565584", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA565584 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27521701 27521701 PRJNA565584_P_NODE_24043_length_637_cov_1.803191_g22910_i0 PRJNA565584 24043 637 1.803191 11.48632667 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 101 2.85e-23   NR MEN9613892.1 2762014 g22910 i0 55.2 0.452119309262166 96 43 45.2 0 2 289 60 155 MEN9613892.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 288 101 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29447586 29447586 PRJNA565584_P_NODE_217570_length_237_cov_4.000000_g216418_i0 PRJNA565584 217570 237 4 9.48 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 53.1 5.3e-6   NR MCX6736109.1 2762014 g216418 i0 75 0.810126582278481 32 8 40.5 0 91 186 39 70 MCX6736109.1 ribonuclease HII [Candidatus Parcubacteria bacterium] diamond 192 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29699903 29699903 PRJNA565584_P_NODE_120090_length_282_cov_1.057416_g118938_i0 PRJNA565584 120090 282 1.057416 2.98191312 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 97.8 2.67e-21   NR RMD63071.1 2762014 g118938 i0 53.2 1 94 44 100 0 282 1 293 386 RMD63071.1 MAG: hypothetical protein D6833_06050, partial [Candidatus Parcubacteria bacterium] diamond 282 97.8 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32324319 32324319 PRJNA565584_P_NODE_114679_length_285_cov_1.452830_g113527_i0 PRJNA565584 114679 285 1.45283 4.1405655 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 47 0.0016   NR MCX6744137.1 2762014 g113527 i0 42 1.45263157894737 69 32 67.4 3 197 6 157 222 MCX6744137.1 MliC family protein [Candidatus Parcubacteria bacterium] diamond 414 47 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;