RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA565584", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Chisholmiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Chisholmiibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA565584 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27963770 27963770 PRJNA565584_P_NODE_188085_length_247_cov_0.885057_g186933_i0 PRJNA565584 188085 247 0.885057 2.18609079 Candidatus Chisholmbacteria bacterium 2750073 Bacteria Bacteria 43.9 0.014   NR MBI2009889.1 2750073 g186933 i0 34.5 0.704453441295547 58 38 70.4 0 57 230 138 195 MBI2009889.1 glycosyltransferase family 2 protein [Candidatus Chisholmbacteria bacterium] diamond 174 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Chisholmiibacteriota         Candidatus Chisholmbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;