RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA564810" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 8 ✖

bioproject 1

  • PRJNA564810 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
554088 554088 PRJNA564810_S_NODE_6041_length_236_cov_3.181287_g6019_i0 PRJNA564810 6041 236 3.181287 7.50783732 Bromovirus BMV 3427622 Viruses Viruses 436 4.999999999999999e-118   NTclustered gi|1489810643|gb|MH025767.1| 12302 g6019 i0 100 36.0550847457627 236 0 100 0 1 236 901 1136 Brome mosaic virus isolate Ohio segment RNA 3, complete sequence blastn 8509 436 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
1829660 1829660 PRJNA564810_S_NODE_5622_length_243_cov_1.398876_g5600_i0 PRJNA564810 5622 243 1.398876 3.39926868 Iltovirus gallidalpha1 3050286 Viruses Viruses 167 7.5e-37   NTclustered gi|1039754121|gb|KX165321.1| 10386 g5600 i0 88.406 1.1358024691358 138 16 57 0 106 243 24398 24261 Mutant Gallid alphaherpesvirus 1 strain GdORFC, complete genome blastn 276 167 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Iltovirus Iltovirus gallidalpha1
15856859 15856859 PRJNA564810_S_NODE_6993_length_223_cov_1.993671_g6971_i0 PRJNA564810 6993 223 1.993671 4.44588633 Tubulavirales sp. 2833306 Viruses Viruses 340 3.77e-89   NTclustered gi|2906146639|gb|PQ646259.1| 2833306 g6971 i0 94.17 2 223 13 100 0 1 223 3771 3993 MAG: Tubulavirales sp. isolate k127_2604397 genomic sequence blastn 446 340 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales     Tubulavirales sp.
15856865 15856865 PRJNA564810_S_NODE_8393_length_205_cov_2.371429_g8371_i0 PRJNA564810 8393 205 2.371429 4.86142945 Caudoviricetes sp. 2832643 Viruses Viruses 379 7.229999999999999e-101   NTclustered gi|2058055913|tpg|BK042641.1| 2832643 g8371 i0 100 73.4 205 0 100 0 1 205 17494 17290 MAG TPA_asm: Caudoviricetes sp. isolate ct9by1, partial genome blastn 15047 379 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
19680645 19680645 PRJNA564810_S_NODE_1516_length_360_cov_131.667797_g1494_i0 PRJNA564810 1516 360 131.667797 474.0040692 Betaentomopoxvirus amoorei 28321 Viruses Viruses 52.8 0.034   NTclustered gi|9964314|ref|NC_002520.1| 28321 g1494 i0 94.286 0.0972222222222222 35 1 9 1 219 252 153509 153475 Amsacta moorei entomopoxvirus 'L', complete genome blastn 35 52.8 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Betaentomopoxvirus Betaentomopoxvirus amoorei
20956277 20956277 PRJNA564810_S_NODE_5357_length_247_cov_2.824176_g5335_i0 PRJNA564810 5357 247 2.824176 6.97571472 Chaphamaparvovirus galliform7 3427866 Viruses Viruses 52.8 0.022   NTclustered gi|2218754787|gb|OM920501.1| 3052109 g5335 i0 100 0.11336032388664 28 0 11 0 162 189 3795 3822 Galliform chaphamaparvovirus 4 strain AU/VIC/PV4, complete genome blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Chaphamaparvovirus Chaphamaparvovirus galliform7
22231268 22231268 PRJNA564810_S_NODE_2218_length_327_cov_1.576336_g2196_i0 PRJNA564810 2218 327 1.576336 5.15461872 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.009   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g2196 i0 100 0.174311926605505 29 0 9 0 299 327 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
32197464 32197464 PRJNA564810_S_NODE_7678_length_216_cov_1.536424_g7656_i0 PRJNA564810 7678 216 1.536424 3.31867584 Betapolyomavirus macacae 1891767 Viruses Viruses 63.5 1.22e-9   NR AAK29054.1 1891767 g7656 i0 75 0.611111111111111 44 11 61.1 0 64 195 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 132 63.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;