RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA564810" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564810 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4381629 4381629 PRJNA564810_S_NODE_1924_length_341_cov_1.231884_g1902_i0 PRJNA564810 1924 341 1.231884 4.20072444 Bacteria 2 Bacteria Bacteria 116 1.08e-30   NR MBI3821448.1 2026780 g1902 i0 82.5 30.1407624633431 63 11 55.4 0 3 191 87 149 MBI3821448.1 NADP-dependent phosphogluconate dehydrogenase [Planctomycetota bacterium] diamond 10278 117 0.991452991452991 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
21535541 21535541 PRJNA564810_S_NODE_3037_length_297_cov_1.465517_g3015_i0 PRJNA564810 3037 297 1.465517 4.35258549 Pseudomonadati 3379134 Bacteria Bacteria 53.1 1.47e-5   NR MEM6392893.1 2026780 g3015 i0 41.3 6.07070707070707 75 40 75.8 3 244 20 206 276 MEM6392893.1 magnesium/cobalt transporter CorA [Planctomycetota bacterium] diamond 1803 53.5 0.992523364485981 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
24780419 24780419 PRJNA564810_S_NODE_8560_length_202_cov_2.474453_g8538_i0 PRJNA564810 8560 202 2.474453 4.99839506 Planctomycetota bacterium 2026780 Bacteria Bacteria 52.8 0.018   NTclustered gi|2621785075|emb|OY781533.1| 2026780 g8538 i0 100 0.138613861386139 28 0 14 0 23 50 3269720 3269747 MAG: Planctomycetota bacterium isolate 5c15c3fa-c5a4-4479-8b82-14142e451f6c genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29510730 29510730 PRJNA564810_S_NODE_5290_length_248_cov_2.890710_g5268_i0 PRJNA564810 5290 248 2.89071 7.1689608 Urbifossiella sp. 2807431 Bacteria Bacteria 44.3 0.01   NR HYH63325.1 2807431 g5268 i0 52.6 0.459677419354839 38 18 46 0 7 120 187 224 HYH63325.1 2OG-Fe(II) oxygenase [Urbifossiella sp.] diamond 114 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella sp.
31641550 31641550 PRJNA564810_S_NODE_5596_length_243_cov_2.539326_g5574_i0 PRJNA564810 5596 243 2.539326 6.17056218 Bacteria 2 Bacteria Bacteria 51.6 2.7e-5   NR HEY2910011.1 2052164 g5574 i0 59 1.90123456790123 39 16 48.1 0 242 126 260 298 HEY2910011.1 c-type cytochrome domain-containing protein [Gemmataceae bacterium] diamond 462 51.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32482289 32482289 PRJNA564810_S_NODE_3219_length_292_cov_2.603524_g3197_i0 PRJNA564810 3219 292 2.603524 7.60229008 Planctomycetota bacterium 2026780 Bacteria Bacteria 53.9 2.74e-6   NR GMV79991.1 2026780 g3197 i0 49 1.09931506849315 51 26 52.4 0 4 156 11 61 GMV79991.1 MAG: hypothetical protein AMXMBFR7_11750 [Planctomycetota bacterium] diamond 321 53.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;