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contig_metadata

11 rows where bioproject = "PRJNA564810" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA564810 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
554073 554073 PRJNA564810_S_NODE_1961_length_339_cov_2.105839_g1939_i0 PRJNA564810 1961 339 2.105839 7.13879421 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 127 2.69e-32   NR KAH9113818.1 100861 g1939 i0 70.7 3.73451327433628 82 23 72.6 1 334 89 340 420 KAH9113818.1 hypothetical protein AeMF1_012051 [Aphanomyces euteiches] diamond 1266 128 0.9921875 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11336730 11336730 PRJNA564810_S_NODE_1489_length_363_cov_1.721477_g1467_i0 PRJNA564810 1489 363 1.721477 6.24896151 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 152 1.0299999999999999e-40   NR XP_012202741.1 695850 g1467 i0 67.6 5.90082644628099 102 33 84.3 0 363 58 467 568 XP_012202741.1 hypothetical protein SPRG_08003 [Saprolegnia parasitica CBS 223.65] diamond 2142 152 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
17711474 17711474 PRJNA564810_S_NODE_1794_length_346_cov_4.085409_g1772_i0 PRJNA564810 1794 346 4.085409 14.13551514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 211 5.11e-50   NTclustered gi|937408816|ref|NC_027966.1| 114742 g1772 i0 79.739 94.7109826589595 306 51 87 10 45 344 9797 10097 Pythium insidiosum mitochondrial DNA, complete genome blastn 32770 213 0.990610328638498 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
18406200 18406200 PRJNA564810_S_NODE_455_length_509_cov_2.619369_g434_i0 PRJNA564810 455 509 2.619369 13.33258821 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 117 1.7400000000000003e-21   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g434 i0 77.949 59.2848722986248 195 37 38 5 51 243 917 1107 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 30176 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
24780400 24780400 PRJNA564810_S_NODE_3140_length_294_cov_2.751092_g3118_i0 PRJNA564810 3140 294 2.751092 8.08821048 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 78.2 1.87e-14   NR XP_024576029.1 4781 g3118 i0 85 9.36734693877551 40 6 40.8 0 1 120 347 386 XP_024576029.1 dead-box atp-dependent rna helicase 8 [Plasmopara halstedii] diamond 2754 78.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
27914140 27914140 PRJNA564810_S_NODE_7025_length_223_cov_0.860759_g7003_i0 PRJNA564810 7025 223 0.860759 1.91949257 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 70.9 1.37e-12   NR KAF4145619.1 4787 g7003 i0 72.7 1.77578475336323 44 12 59.2 0 8 139 203 246 KAF4145619.1 GDP dissociation inhibitor domain-containing protein [Phytophthora infestans] diamond 396 70.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
29794847 29794847 PRJNA564810_S_NODE_2911_length_301_cov_3.639831_g2889_i0 PRJNA564810 2911 301 3.639831 10.95589131 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 59.7 7.19e-8   NR KAF0735749.1 100861 g2889 i0 41 1.04651162790698 105 53 96.7 3 298 8 235 338 KAF0735749.1 hypothetical protein Ae201684_007755 [Aphanomyces euteiches] diamond 315 59.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30837597 30837597 PRJNA564810_S_NODE_2094_length_332_cov_2.250936_g2072_i0 PRJNA564810 2094 332 2.250936 7.47310752 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 64.7 2.09e-9   NR DAZ99226.1 4803 g2072 i0 35.6 2.26807228915663 87 56 78.6 0 3 263 796 882 DAZ99226.1 TPA: hypothetical protein N0F65_008093 [Lagenidium giganteum] diamond 753 64.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31153172 31153172 PRJNA564810_S_NODE_7175_length_221_cov_2.179487_g7153_i0 PRJNA564810 7175 221 2.179487 4.81666627 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 49.7 1.01e-4   NR CCI43921.1 65357 g7153 i0 63.6 9.38009049773756 33 12 44.8 0 1 99 1086 1118 CCI43921.1 unnamed protein product [Albugo candida] diamond 2073 49.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
31198463 31198463 PRJNA564810_S_NODE_3695_length_280_cov_1.897674_g3673_i0 PRJNA564810 3695 280 1.897674 5.3134872 root 1 Root_unresolved Root_unresolved 47 0.00189   NR TYZ63837.1 1485010 g3673 i0 51.1 1.92857142857143 47 23 50.4 0 274 134 651 697 TYZ63837.1 hypothetical protein PybrP1_001433 [[Pythium] brassicae (nom. inval.)] diamond 540 47 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
31546976 31546976 PRJNA564810_S_NODE_3736_length_279_cov_1.761682_g3714_i0 PRJNA564810 3736 279 1.761682 4.91509278 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 78.2 2.07e-14   NR TMW64388.1 41045 g3714 i0 67.2 6.3010752688172 64 20 68.8 1 192 1 242 304 TMW64388.1 hypothetical protein Poli38472_013010 [Pythium oligandrum] diamond 1758 78.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;