RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA564810" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA564810 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26762768 26762768 PRJNA564810_S_NODE_1981_length_338_cov_2.153846_g1959_i0 PRJNA564810 1981 338 2.153846 7.27999948 Sorangium cellulosum 56 Bacteria Bacteria 50.8 1.56e-4   NR WIF20035.1 56 g1959 i0 47.3 0.949704142011834 55 24 48.8 1 3 167 506 555 WIF20035.1 hypothetical protein [Sorangium cellulosum] diamond 321 50.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
31216347 31216347 PRJNA564810_S_NODE_1775_length_347_cov_1.687943_g1753_i0 PRJNA564810 1775 347 1.687943 5.85716221 Polyangiaceae bacterium 2268199 Bacteria Bacteria 68.9 1.98e-12   NR HEY4014472.1 2268199 g1753 i0 42.7 0.648414985590778 75 43 64.8 0 281 57 30 104 HEY4014472.1 H-type lectin domain-containing protein [Polyangiaceae bacterium] diamond 225 68.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;