RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA564810" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA564810 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18406206 18406206 PRJNA564810_S_NODE_655_length_457_cov_6.987245_g633_i0 PRJNA564810 655 457 6.987245 31.93170965 Nitzschia sp. IriIs04 1444690 SAR_Eukaryotes SAR_Eukaryotes 143 2.56e-29   NTclustered gi|944186150|dbj|LC052662.1| 1444690 g633 i0 86.26 1.47045951859956 131 18 29 0 14 144 1231 1361 Nitzschia sp. IriIs04 sec61alpha mRNA for Sec61alpha, complete cds blastn 672 143 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia sp. IriIs04
28563735 28563735 PRJNA564810_S_NODE_6007_length_237_cov_1.424419_g5985_i0 PRJNA564810 6007 237 1.424419 3.37587303 Thalassiosira pseudonana CCMP1335 296543 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.0211   NR XP_002291878.1 296543 g5985 i0 45 0.506329113924051 40 22 50.6 0 3 122 83 122 XP_002291878.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335] diamond 120 42.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
28879249 28879249 PRJNA564810_S_NODE_2288_length_324_cov_1.837838_g2266_i0 PRJNA564810 2288 324 1.837838 5.95459512 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 50.4 1.9e-4   NR KAI2496328.1 210448 g2266 i0 40.9 0.611111111111111 66 38 61.1 1 1 198 571 635 KAI2496328.1 Sir2 family [Fragilaria crotonensis] diamond 198 50.4 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;