RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA564810" and tax_kingdom = "Shotokuvirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA564810 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20956277 20956277 PRJNA564810_S_NODE_5357_length_247_cov_2.824176_g5335_i0 PRJNA564810 5357 247 2.824176 6.97571472 Chaphamaparvovirus galliform7 3427866 Viruses Viruses 52.8 0.022   NTclustered gi|2218754787|gb|OM920501.1| 3052109 g5335 i0 100 0.11336032388664 28 0 11 0 162 189 3795 3822 Galliform chaphamaparvovirus 4 strain AU/VIC/PV4, complete genome blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Chaphamaparvovirus Chaphamaparvovirus galliform7
32197464 32197464 PRJNA564810_S_NODE_7678_length_216_cov_1.536424_g7656_i0 PRJNA564810 7678 216 1.536424 3.31867584 Betapolyomavirus macacae 1891767 Viruses Viruses 63.5 1.22e-9   NR AAK29054.1 1891767 g7656 i0 75 0.611111111111111 44 11 61.1 0 64 195 494 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 132 63.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;