RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA564810", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA564810 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28942792 28942792 PRJNA564810_S_NODE_8388_length_205_cov_2.428571_g8366_i0 PRJNA564810 8388 205 2.428571 4.97857055 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 72 4.18e-14   NR HKQ31572.1 2202153 g8366 i0 50.7 1.9609756097561 67 33 98 0 3 203 63 129 HKQ31572.1 zinc-binding dehydrogenase [Thermodesulfobacteriota bacterium] diamond 402 72 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30900912 30900912 PRJNA564810_S_NODE_5354_length_247_cov_2.989011_g5332_i0 PRJNA564810 5354 247 2.989011 7.38285717 Oleidesulfovibrio alaskensis 58180 Bacteria Bacteria 43.9 0.0155   NR WP_027182094.1 58180 g5332 i0 45 1.46963562753036 60 32 72.9 1 4 183 19 77 WP_027182094.1 ATP-dependent nuclease [Oleidesulfovibrio alaskensis] diamond 363 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Oleidesulfovibrio Oleidesulfovibrio alaskensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;