RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA564810", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA564810 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27806016 27806016 PRJNA564810_S_NODE_3184_length_293_cov_2.083333_g3162_i0 PRJNA564810 3184 293 2.083333 6.10416569 Spirochaetia bacterium 2053615 Bacteria Bacteria 61.2 1.41e-8   NR HTH14570.1 2053615 g3162 i0 36.1 0.993174061433447 97 38 99.3 2 291 1 97 169 HTH14570.1 arylamine N-acetyltransferase [Spirochaetia bacterium] diamond 291 61.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
28247715 28247715 PRJNA564810_S_NODE_6406_length_231_cov_1.638554_g6384_i0 PRJNA564810 6406 231 1.638554 3.78505974 Spirochaetia bacterium 2053615 Bacteria Bacteria 124 1.42e-34   NR GHV22579.1 2053615 g6384 i0 93.3 0.974025974025974 75 5 97.4 0 226 2 41 115 GHV22579.1 hypothetical protein FACS189494_09610 [Spirochaetia bacterium] diamond 225 124 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;