RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA564810" and tax_clade = "Metamonada"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA564810 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9482543 9482543 PRJNA564810_S_NODE_4328_length_266_cov_2.462687_g4306_i0 PRJNA564810 4328 266 2.462687 6.55074742 Streblomastix strix 222440 Preaxostyla other_Eukaryota 103 4.39e-24   NR KAA6402949.1 222440 g4306 i0 56 1.89473684210526 84 37 94.7 0 7 258 137 220 KAA6402949.1 MAG: putative cAMP-dependent protein kinase regulatory subunit [Streblomastix strix] diamond 504 103 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
12033302 12033302 PRJNA564810_S_NODE_6050_length_236_cov_2.298246_g6028_i0 PRJNA564810 6050 236 2.298246 5.42386056 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 436 4.999999999999999e-118   NTclustered gi|2319615609|ref|XR_007835988.1| 412133 g6028 i0 100 13.9279661016949 236 0 100 0 1 236 564 329 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034140), rRNA blastn 3287 436 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31533268 31533268 PRJNA564810_S_NODE_416_length_522_cov_6.203501_g396_i0 PRJNA564810 416 522 6.203501 32.38227522 Streblomastix strix 222440 Preaxostyla other_Eukaryota 71.6 4.15e-12   NR KAA6388004.1 222440 g396 i0 63.8 0.540229885057471 47 17 27 0 517 377 120 166 KAA6388004.1 MAG: putative Translationally-controlled tumor protein [Streblomastix strix] diamond 282 71.6 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Streblomastigidae Streblomastix Streblomastix strix
31817601 31817601 PRJNA564810_S_NODE_1917_length_341_cov_2.336957_g1895_i0 PRJNA564810 1917 341 2.336957 7.96902337 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 88.6 9.12e-18   NR KAJ5076803.1 1746090 g1895 i0 57.1 0.6158357771261 70 28 61.6 1 308 99 465 532 KAJ5076803.1 methylmalonate-semialdehyde dehydrogenase [Anaeramoeba ignava] diamond 210 88.6 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;