RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA564810", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA564810 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4381643 4381643 PRJNA564810_S_NODE_5244_length_249_cov_2.217391_g5222_i0 PRJNA564810 5244 249 2.217391 5.52130359 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 52.8 0.023   NTclustered gi|2119433545|ref|XM_044692354.1| 51637 g5222 i0 100 0.112449799196787 28 0 11 0 113 140 3731 3758 Naegleria lovaniensis uncharacterized protein (C9374_002888), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
30092852 30092852 PRJNA564810_S_NODE_1892_length_342_cov_0.949458_g1870_i0 PRJNA564810 1892 342 0.949458 3.24714636 Naegleria 5761 Heterolobosea other_Eukaryota 44.3 0.0328   NR XP_002673568.1 5762 g1870 i0 35.4 1.14035087719298 65 40 55.3 1 340 152 775 839 XP_002673568.1 alpha-actinin [Naegleria gruberi] diamond 390 44.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31311542 31311542 PRJNA564810_S_NODE_4975_length_254_cov_2.693122_g4953_i0 PRJNA564810 4975 254 2.693122 6.84052988 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 137 9.31e-39   NR XP_044554236.1 51637 g4953 i0 79 0.956692913385827 81 17 95.7 0 252 10 106 186 XP_044554236.1 uncharacterized protein C9374_012594 [Naegleria lovaniensis] diamond 243 137 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
32229220 32229220 PRJNA564810_S_NODE_6578_length_228_cov_2.791411_g6556_i0 PRJNA564810 6578 228 2.791411 6.36441708 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 77.4 9.63e-15   NR XP_044565043.1 5763 g6556 i0 55.4 2.90789473684211 56 25 73.7 0 226 59 235 290 XP_044565043.1 uncharacterized protein FDP41_013544 [Naegleria fowleri] diamond 663 77.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;