RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA564810" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA564810 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18406211 18406211 PRJNA564810_S_NODE_7655_length_216_cov_2.245033_g7633_i0 PRJNA564810 7655 216 2.245033 4.84927128 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.9 8.13e-23   NR XP_013760036.1 461836 g7633 i0 74.2 2.58333333333333 62 16 86.1 0 214 29 105 166 XP_013760036.1 Ras-like protein rasG [Thecamonas trahens ATCC 50062] diamond 558 96.7 0.991726990692865 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27079307 27079307 PRJNA564810_S_NODE_1242_length_381_cov_4.363924_g1220_i0 PRJNA564810 1242 381 4.363924 16.62655044 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 68.2 2.32e-10   NR XP_013757371.1 461836 g1220 i0 33.8 4.73228346456693 139 69 96.9 5 371 3 1242 1373 XP_013757371.1 uncharacterized protein AMSG_06186 [Thecamonas trahens ATCC 50062] diamond 1803 68.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27616508 27616508 PRJNA564810_S_NODE_764_length_436_cov_4.576819_g742_i0 PRJNA564810 764 436 4.576819 19.95493084 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 72.8 2.04e-12   NR XP_013759670.1 461836 g742 i0 48.5 0.454128440366972 66 34 45.4 0 3 200 163 228 XP_013759670.1 countin-2 [Thecamonas trahens ATCC 50062] diamond 198 72.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32577187 32577187 PRJNA564810_S_NODE_2879_length_302_cov_2.894515_g2857_i0 PRJNA564810 2879 302 2.894515 8.7414353 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 54.7 1.91e-6   NR XP_013762645.1 461836 g2857 i0 43.8 0.725165562913907 73 32 72.5 1 298 80 120 183 XP_013762645.1 uncharacterized protein AMSG_00366 [Thecamonas trahens ATCC 50062] diamond 219 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;