RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA564013" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9476720 9476720 PRJNA564013_P_NODE_173208_length_331_cov_2.407407_g170358_i0 PRJNA564013 173208 331 2.407407 7.96851717 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 248 3.7e-61   NTclustered gi|60698656|gb|AY915745.1| 6182 g170358 i0 98.571 7.29607250755287 140 2 42 0 153 292 467 328 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 2415 248 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
12030755 12030755 PRJNA564013_P_NODE_348330_length_199_cov_12.442029_g345478_i0 PRJNA564013 348330 199 12.442029 24.75963771 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.017   NTclustered gi|687688146|emb|LK600640.1| 57078 g345478 i0 100 0.14070351758794 28 0 14 0 38 65 487 514 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0190466 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
19678538 19678538 PRJNA564013_P_NODE_371576_length_176_cov_21.443478_g368724_i0 PRJNA564013 371576 176 21.443478 37.74052128 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 291 2.89e-74   NTclustered gi|56757963|gb|AY815390.1| 6182 g368724 i0 97.11 122.3125 173 3 100 2 1 171 2334 2162 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 21527 291 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24776000 24776000 PRJNA564013_P_NODE_254680_length_257_cov_7.617347_g251828_i0 PRJNA564013 254680 257 7.617347 19.57658179 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 374 4.3899999999999995e-99   NTclustered gi|60698688|gb|AY915747.1| 6182 g251828 i0 98.131 1.98832684824903 214 4 83 0 23 236 165 378 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 511 374 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28058322 28058322 PRJNA564013_P_NODE_309865_length_219_cov_3.867089_g307013_i0 PRJNA564013 309865 219 3.867089 8.46892491 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 86.7 2.11e-20   NR AAX31080.1 6182 g307013 i0 79.6 0.671232876712329 49 10 67.1 0 171 25 11 59 AAX31080.1 SJCHGC09793 protein [Schistosoma japonicum] diamond 147 86.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28342552 28342552 PRJNA564013_P_NODE_315126_length_216_cov_3.167742_g312274_i0 PRJNA564013 315126 216 3.167742 6.84232272 Vorticeros sp. n. MW-2 2544881 Platyhelminthes Platyhelminthes 55.5 8.6e-7   NR WLN31329.1 2544881 g312274 i0 51.9 0.75 54 25 75 1 216 55 111 163 WLN31329.1 NADH dehydrogenase subunit 4 [Vorticeros sp. n. MW-2019] diamond 162 55.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Prolecithophora Plagiostomidae Vorticeros Vorticeros sp. n. MW-2019
29353027 29353027 PRJNA564013_P_NODE_291349_length_231_cov_2.023529_g288497_i0 PRJNA564013 291349 231 2.023529 4.67435199 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 58.2 4.69e-8   NR AAX27441.2 6182 g288497 i0 60.4 1.74025974025974 48 19 62.3 0 86 229 58 105 AAX27441.2 SJCHGC08991 protein, partial [Schistosoma japonicum] diamond 402 58.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29699857 29699857 PRJNA564013_P_NODE_47630_length_570_cov_7.550098_g44880_i0 PRJNA564013 47630 570 7.550098 43.0355586 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 45.4 0.00428   NR ABA40899.1 6182 g44880 i0 53.8 0.205263157894737 39 16 19.5 1 266 156 4 42 ABA40899.1 SJCHGC09658 protein, partial [Schistosoma japonicum] diamond 117 45.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
30458786 30458786 PRJNA564013_P_NODE_17233_length_874_cov_16.105781_g15107_i0 PRJNA564013 17233 874 16.105781 140.76452594 Schistosoma margrebowiei 48269 Platyhelminthes Platyhelminthes 68.9 1.11e-9   NR VDP53835.1 48269 g15107 i0 35.3 0.926773455377574 136 78 45 4 12 404 13 143 VDP53835.1 unnamed protein product [Schistosoma margrebowiei] diamond 810 68.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma margrebowiei
31135358 31135358 PRJNA564013_P_NODE_160735_length_342_cov_2.818505_g157885_i0 PRJNA564013 160735 342 2.818505 9.6392871 Metazoa 33208 Platyhelminthes Platyhelminthes 115 1.72e-30   NR CAI2722819.1 6189 g157885 i0 54.3 8.29824561403509 94 42 82.5 1 20 301 39 131 CAI2722819.1 unnamed protein product [Schistosoma spindalis] diamond 2838 115 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma spindalis
32039177 32039177 PRJNA564013_P_NODE_293698_length_229_cov_5.238095_g290846_i0 PRJNA564013 293698 229 5.238095 11.99523755 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 129 4.96e-33   NR AAX28387.3 6182 g290846 i0 94.4 11.3187772925764 72 4 94.3 0 1 216 369 440 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 2592 129 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;