RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA564013" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26921094 26921094 PRJNA564013_P_NODE_331082_length_208_cov_1.761905_g328230_i0 PRJNA564013 331082 208 1.761905 3.6647624 Candidatus Paceibacter sp. 2715251 Bacteria Bacteria 108 1.17e-25   NR MCC2630557.1 2715251 g328230 i0 69.6 0.995192307692308 69 21 99.5 0 208 2 64 132 MCC2630557.1 hypothetical protein [Candidatus Paceibacter sp.] diamond 207 108 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia Minisyncoccales Candidatus Paceibacteraceae Candidatus Paceibacter Candidatus Paceibacter sp.
31153077 31153077 PRJNA564013_P_NODE_145195_length_356_cov_3.806780_g142346_i0 PRJNA564013 145195 356 3.80678 13.5521368 Minisyncoccota bacterium 2053589 Bacteria Bacteria 187 2.24e-53   NR HRZ99664.1 2053589 g142346 i0 80.2 0.935393258426966 111 22 93.5 0 333 1 90 200 HRZ99664.1 PKD domain-containing protein [Candidatus Paceibacterota bacterium] diamond 333 187 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32070738 32070738 PRJNA564013_P_NODE_199218_length_307_cov_2.447154_g196367_i0 PRJNA564013 199218 307 2.447154 7.51276278 Minisyncoccia bacterium 3120121 Bacteria Bacteria 166 1.58e-50   NR MFN7088565.1 3120121 g196367 i0 90.2 0.996742671009772 102 10 99.7 0 307 2 32 133 MFN7088565.1 DNA repair protein RecN [Minisyncoccia bacterium] diamond 306 166 1 Bacteria Bacteria candidate phyla   Minisyncoccota Minisyncoccia       Minisyncoccia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;