RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA564013", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA564013 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4375939 4375939 PRJNA564013_P_NODE_186804_length_318_cov_14.334630_g183954_i0 PRJNA564013 186804 318 14.33463 45.5841234 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 52.8 0.03   NTclustered gi|1752410957|ref|XM_795009.4| 7668 g183954 i0 100 0.264150943396226 28 0 9 0 240 267 3021 3048 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115918064 (LOC115918064), transcript variant X1, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
28072083 28072083 PRJNA564013_P_NODE_17925_length_860_cov_8.434293_g15766_i0 PRJNA564013 17925 860 8.434293 72.5349198 Metazoa 33208 Echinodermata other_Eukaryota 55.5 1.58e-4   NR XP_033639777.1 7604 g15766 i0 63.9 0.722093023255814 36 12 12.6 1 55 162 824 858 XP_033639777.1 GATOR complex protein MIOS-A-like [Asterias rubens] diamond 621 55.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
32355824 32355824 PRJNA564013_P_NODE_77399_length_460_cov_5.897243_g74578_i0 PRJNA564013 77399 460 5.897243 27.1273178 Anneissia japonica 1529436 Echinodermata other_Eukaryota 72.8 8.3e-12   NR XP_033124239.1 1529436 g74578 i0 45.3 0.489130434782609 75 39 48.3 2 160 381 85 158 XP_033124239.1 protein XRP2-like [Anneissia japonica] diamond 225 72.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;