RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA564013", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27237267 27237267 PRJNA564013_P_NODE_351243_length_197_cov_10.176471_g348391_i0 PRJNA564013 351243 197 10.176471 20.04764787 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 53.5 2.92e-6   NR ETO04964.1 46433 g348391 i0 46.2 2.43654822335025 52 22 79.2 1 192 37 89 134 ETO04964.1 serine/threonine protein phosphatase [Reticulomyxa filosa] diamond 480 53.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29289728 29289728 PRJNA564013_P_NODE_364549_length_187_cov_6.626984_g361697_i0 PRJNA564013 364549 187 6.626984 12.39246008 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 72.4 3.05e-13   NR ETO03258.1 46433 g361697 i0 70.6 2.34224598930481 51 15 81.8 0 21 173 128 178 ETO03258.1 hypothetical protein RFI_34152 [Reticulomyxa filosa] diamond 438 72.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30237248 30237248 PRJNA564013_P_NODE_201012_length_305_cov_4.467213_g198161_i0 PRJNA564013 201012 305 4.467213 13.62499965 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 57.4 4.54e-7   NR ETO20382.1 46433 g198161 i0 41.9 0.60983606557377 62 36 61 0 58 243 125 186 ETO20382.1 vacuolar sorting protein 9 domain-containing protein, partial [Reticulomyxa filosa] diamond 186 57.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;