RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA564013", tax_clade = "Bacteria candidate phyla" and tax_phylum = "candidate division WOR-3"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • candidate division WOR-3 · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA564013 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30237225 30237225 PRJNA564013_P_NODE_107472_length_398_cov_23.403561_g104632_i0 PRJNA564013 107472 398 23.403561 93.14617278 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 45.1 0.0306   NR MBN1694309.1 2052148 g104632 i0 73.1 0.195979899497487 26 7 19.6 0 316 393 45 70 MBN1694309.1 T9SS type A sorting domain-containing protein [candidate division WOR-3 bacterium] diamond 78 45.1 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
31153084 31153084 PRJNA564013_P_NODE_159875_length_342_cov_32.416370_g157025_i0 PRJNA564013 159875 342 32.41637 110.8639854 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 45.1 0.0176   NR MBN1694309.1 2052148 g157025 i0 73.1 0.228070175438596 26 7 22.8 0 260 337 45 70 MBN1694309.1 T9SS type A sorting domain-containing protein [candidate division WOR-3 bacterium] diamond 78 45.1 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;