RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA564013", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA564013 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28469011 28469011 PRJNA564013_P_NODE_192266_length_313_cov_7.686508_g189415_i0 PRJNA564013 192266 313 7.686508 24.05877004 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 124 1.48e-33   NR GIW67793.1 2762014 g189415 i0 75.9 0.795527156549521 83 20 79.6 0 57 305 79 161 GIW67793.1 MAG: hypothetical protein KatS3mg096_661 [Candidatus Parcubacteria bacterium] diamond 249 124 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29257950 29257950 PRJNA564013_P_NODE_25109_length_748_cov_9.608443_g22676_i0 PRJNA564013 25109 748 9.608443 71.87115364 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 148 7.369999999999998e-41   NR GIW67793.1 2762014 g22676 i0 52.8 0.782085561497326 195 47 76.2 2 597 28 1 155 GIW67793.1 MAG: hypothetical protein KatS3mg096_661 [Candidatus Parcubacteria bacterium] diamond 585 148 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29352996 29352996 PRJNA564013_P_NODE_1069_length_2670_cov_10.619011_g735_i0 PRJNA564013 1069 2670 10.619011 283.5275937 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 147 3.69e-36   NR GIW67743.1 2762014 g735 i0 42.6 0.229213483146067 204 114 22.6 3 1020 1622 14 217 GIW67743.1 MAG: hypothetical protein KatS3mg096_611 [Candidatus Parcubacteria bacterium] diamond 612 147 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;