RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA564013", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA564013 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28752971 28752971 PRJNA564013_P_NODE_2227_length_2004_cov_5.631498_g1611_i0 PRJNA564013 2227 2004 5.631498 112.85521992 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 246 3.09e-71   NR MBP9779292.1 2044595 g1611 i0 41.3 1.01347305389222 344 186 49.7 7 419 1414 36 375 MBP9779292.1 glycosyltransferase family 4 protein [Candidatus Altimarinota bacterium] diamond 2031 246 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30047451 30047451 PRJNA564013_P_NODE_12671_length_994_cov_6.545552_g10827_i0 PRJNA564013 12671 994 6.545552 65.06278688 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 65.5 7.45e-8   NR MFA6436444.1 2044595 g10827 i0 42.2 0.271629778672032 90 47 26.6 2 994 731 266 352 MFA6436444.1 type IV pilus twitching motility protein PilT [Candidatus Altimarinota bacterium] diamond 270 65.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;