RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA564013", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA564013 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14579766 14579766 PRJNA564013_P_NODE_310772_length_219_cov_1.455696_g307920_i0 PRJNA564013 310772 219 1.455696 3.18797424 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 381 2.1799999999999996e-101   NTclustered gi|54306228|gb|AY626163.1| 297386 g307920 i0 98.174 100.849315068493 219 3 100 1 1 219 955 738 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 22086 381 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
27932128 27932128 PRJNA564013_P_NODE_86665_length_436_cov_15.008000_g83835_i0 PRJNA564013 86665 436 15.008 65.43488 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 84.3 9.66e-17   NR AKT93954.1 5778 g83835 i0 38.3 2.05733944954128 107 66 73.6 0 405 85 6 112 AKT93954.1 H(+)-transporting ATPase subunit 6 [Vermamoeba vermiformis] diamond 897 84.3 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32860326 32860326 PRJNA564013_P_NODE_269300_length_246_cov_4.140541_g266448_i0 PRJNA564013 269300 246 4.140541 10.18573086 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 60.8 3.28e-9   NR AKT93945.1 5778 g266448 i0 47.7 0.536585365853659 44 23 53.7 0 152 21 72 115 AKT93945.1 ribosomal protein L6 [Vermamoeba vermiformis] diamond 132 60.8 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;