RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA562549" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA562549 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26762580 26762580 PRJNA562549_P_NODE_25481_length_232_cov_3.795322_g25248_i0 PRJNA562549 25481 232 3.795322 8.80514704 Planctomycetota bacterium 2026780 Bacteria Bacteria 65.1 5.29e-12   NR NBC10562.1 2026780 g25248 i0 65.5 0.711206896551724 55 18 71.1 1 25 189 1 54 NBC10562.1 YqaE/Pmp3 family membrane protein [Planctomycetota bacterium] diamond 165 65.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27300480 27300480 PRJNA562549_P_NODE_8243_length_400_cov_0.929204_g8010_i0 PRJNA562549 8243 400 0.929204 3.716816 Planctomycetota bacterium 2026780 Bacteria Bacteria 45.4 0.0181   NR MES2793200.1 2026780 g8010 i0 33.1 0.9525 127 63 85.5 7 354 13 95 212 MES2793200.1 hypothetical protein [Planctomycetota bacterium] diamond 381 45.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30016108 30016108 PRJNA562549_P_NODE_36271_length_202_cov_1.687943_g36038_i0 PRJNA562549 36271 202 1.687943 3.4096448600000002 Pirellulaceae bacterium 2699754 Bacteria Bacteria 60.8 3.38e-9   NR MFK7736369.1 2699754 g36038 i0 58 0.742574257425743 50 20 74.3 1 191 42 21 69 MFK7736369.1 peptidylprolyl isomerase [Pirellulaceae bacterium] diamond 150 60.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium
30092827 30092827 PRJNA562549_P_NODE_18252_length_271_cov_1.890476_g18019_i0 PRJNA562549 18252 271 1.890476 5.12318996 Roseimaritima 1579506 Bacteria Bacteria 53.5 8.64e-6   NR WP_145352804.1 1930274 g18019 i0 40.4 4.91512915129151 89 46 98.5 2 5 271 151 232 WP_145352804.1 DUF11 domain-containing protein [Roseimaritima multifibrata] diamond 1332 53.9 0.992578849721707 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Roseimaritima Roseimaritima multifibrata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;