RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA562549" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA562549 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7508822 7508822 PRJNA562549_P_NODE_28386_length_221_cov_1.856250_g28153_i0 PRJNA562549 28386 221 1.85625 4.1023125 Anaeromyxobacter 161492 Bacteria Bacteria 353 4.789999999999999e-93   NTclustered gi|2199265233|dbj|AP025591.1| 2918170 g28153 i0 95.475 125.986425339367 221 10 100 0 1 221 947458 947238 Anaeromyxobacter oryzae DNA, complete genome blastn 27843 353 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter oryzae
26858042 26858042 PRJNA562549_P_NODE_34941_length_205_cov_0.902778_g34708_i0 PRJNA562549 34941 205 0.902778 1.8506949 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.00331   NR RLB60749.1 2026735 g34708 i0 48.9 0.658536585365854 45 23 65.9 0 146 12 175 219 RLB60749.1 MAG: hypothetical protein DRI90_12965, partial [Deltaproteobacteria bacterium] diamond 135 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29257828 29257828 PRJNA562549_P_NODE_13269_length_315_cov_2.015748_g13036_i0 PRJNA562549 13269 315 2.015748 6.3496062 Minicystis rosea 888845 Bacteria Bacteria 106 3.45e-25   NR APR78538.1 888845 g13036 i0 53.8 1.76190476190476 93 35 82.9 3 263 3 89 179 APR78538.1 Hypothetical protein A7982_03885 [Minicystis rosea] diamond 555 106 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
29321191 29321191 PRJNA562549_P_NODE_34269_length_206_cov_0.896552_g34036_i0 PRJNA562549 34269 206 0.896552 1.84689712 Archangiaceae bacterium 2684409 Bacteria Bacteria 65.5 2.2e-10   NR MBM4778084.1 2684409 g34036 i0 74.4 0.567961165048544 39 10 56.8 0 205 89 4 42 MBM4778084.1 hypothetical protein [Archangiaceae bacterium] diamond 117 65.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae   Archangiaceae bacterium
30173863 30173863 PRJNA562549_P_NODE_26092_length_230_cov_1.674556_g25859_i0 PRJNA562549 26092 230 1.674556 3.8514788 Corallococcus sicarius 2316726 Bacteria Bacteria 52 1.66e-5   NR WP_147443543.1 2316726 g25859 i0 44.3 2.2695652173913 61 33 79.6 1 222 40 203 262 WP_147443543.1 hypothetical protein [Corallococcus sicarius] diamond 522 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sicarius
30679299 30679299 PRJNA562549_P_NODE_38653_length_175_cov_2.570175_g38420_i0 PRJNA562549 38653 175 2.570175 4.49780625 Myxococcota bacterium 2818507 Bacteria Bacteria 46.2 8.75e-4   NR MFO0744605.1 2818507 g38420 i0 45.7 0.6 35 19 60 0 170 66 632 666 MFO0744605.1 Kazal-type serine protease inhibitor domain-containing protein [Myxococcota bacterium] diamond 105 46.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32891616 32891616 PRJNA562549_P_NODE_32140_length_210_cov_0.872483_g31907_i0 PRJNA562549 32140 210 0.872483 1.8322143 Myxococcales bacterium 2026763 Bacteria Bacteria 70.5 1.21e-13   NR MBL8632916.1 2026763 g31907 i0 100 0.485714285714286 34 0 48.6 0 107 208 1 34 MBL8632916.1 RNA-binding protein [Myxococcales bacterium] diamond 102 70.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;