RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA562549" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA562549 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12024914 12024914 PRJNA562549_P_NODE_36210_length_202_cov_1.843972_g35977_i0 PRJNA562549 36210 202 1.843972 3.72482344 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 267 5.77e-67   NTclustered gi|575456455|gb|CP007128.1| 861299 g35977 i0 90.547 16.8267326732673 201 19 99 0 1 201 3043566 3043766 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 3399 267 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15848630 15848630 PRJNA562549_P_NODE_28033_length_222_cov_3.559006_g27800_i0 PRJNA562549 28033 222 3.559006 7.90099332 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 239 1.41e-58   NTclustered gi|2874253789|emb|OY969773.1| 412054 g27800 i0 88.832 94.1396396396396 197 18 87 2 29 222 421019 420824 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 20899 239 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19672255 19672255 PRJNA562549_P_NODE_28656_length_220_cov_2.062893_g28423_i0 PRJNA562549 28656 220 2.062893 4.5383646 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 278 2.95e-70   NTclustered gi|575456455|gb|CP007128.1| 861299 g28423 i0 89.593 35.5454545454545 221 20 100 2 1 220 3043416 3043634 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 7820 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
31103940 31103940 PRJNA562549_P_NODE_32135_length_210_cov_0.872483_g31902_i0 PRJNA562549 32135 210 0.872483 1.8322143 Pseudomonadati 3379134 Bacteria Bacteria 70.1 5.44e-12   NR HWG53971.1 2026741 g31902 i0 50 11 70 32 95.7 1 202 2 125 194 HWG53971.1 insulinase family protein [Gemmatimonadaceae bacterium] diamond 2310 70.5 0.994326241134752 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;