RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA562549" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA562549 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3096743 3096743 PRJNA562549_P_NODE_33263_length_208_cov_0.884354_g33030_i0 PRJNA562549 33263 208 0.884354 1.83945632 Pseudomonadati 3379134 Bacteria Bacteria 97.4 8.330000000000001e-22   NR OFW06912.1 1797184 g33030 i0 73.3 29.2644230769231 60 16 86.5 0 29 208 10 69 OFW06912.1 MAG: isocitrate dehydrogenase (NADP(+)) [Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36] diamond 6087 97.8 0.995910020449898 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36
28261400 28261400 PRJNA562549_P_NODE_32666_length_209_cov_0.878378_g32433_i0 PRJNA562549 32666 209 0.878378 1.83581002 root 1 Root_unresolved Root_unresolved 99 6.12e-23   NR HEY3443573.1 1962912 g32433 i0 68.1 12.9617224880383 69 18 99 2 209 3 234 298 HEY3443573.1 zinc metalloprotease [Paludibaculum sp.] diamond 2709 99.4 0.995975855130785 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum sp.
28310979 28310979 PRJNA562549_P_NODE_33686_length_207_cov_0.890411_g33453_i0 PRJNA562549 33686 207 0.890411 1.84315077 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 102 3.039999999999999e-23   NR MEJ7848149.1 2283092 g33453 i0 66.2 1.97101449275362 68 23 98.6 0 3 206 205 272 MEJ7848149.1 ATP-binding protein [Pyrinomonadaceae bacterium] diamond 408 102 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28924480 28924480 PRJNA562549_P_NODE_34408_length_206_cov_0.896552_g34175_i0 PRJNA562549 34408 206 0.896552 1.84689712 Candidatus Angelobacter 2976915 Bacteria Bacteria 95.9 1.48e-23   NR MEP7362982.1 1978231 g34175 i0 64.7 15.8300970873786 68 24 99 0 206 3 16 83 MEP7362982.1 glycine cleavage system protein GcvH [Acidobacteriota bacterium] diamond 3261 96.7 0.991726990692865 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29650417 29650417 PRJNA562549_P_NODE_14670_length_300_cov_2.732218_g14437_i0 PRJNA562549 14670 300 2.732218 8.196654 Edaphobacter 388463 Bacteria Bacteria 44.7 0.0156   NR MBS1799104.1 1978231 g14437 i0 43.4 1.59 53 29 52 1 70 225 6 58 MBS1799104.1 NADH-quinone oxidoreductase subunit L [Acidobacteriota bacterium] diamond 477 44.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32147886 32147886 PRJNA562549_P_NODE_30518_length_214_cov_1.274510_g30285_i0 PRJNA562549 30518 214 1.27451 2.7274514 Pseudomonadati 3379134 Bacteria Bacteria 47.4 5.18e-4   NR MFP5206222.1 1978231 g30285 i0 48 4.86448598130841 50 25 68.7 1 52 198 193 242 MFP5206222.1 carbonic anhydrase [Acidobacteriota bacterium] diamond 1041 47.8 0.99163179916318 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;