RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA562549", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA562549 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10059395 10059395 PRJNA562549_P_NODE_28068_length_222_cov_2.614907_g27835_i0 PRJNA562549 28068 222 2.614907 5.80509354 Pseudomonadati 3379134 Bacteria Bacteria 411 2.8199999999999996e-110   NTclustered gi|1226876681|gb|CP022559.1| 197 g27835 i0 100 100 222 0 100 0 1 222 701767 701546 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 22200 411 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
17708780 17708780 PRJNA562549_P_NODE_24434_length_237_cov_1.829545_g24201_i0 PRJNA562549 24434 237 1.829545 4.33602165 Pseudomonadati 3379134 Bacteria Bacteria 438 1.4e-118   NTclustered gi|1226876681|gb|CP022559.1| 197 g24201 i0 100 100 237 0 100 0 1 237 701902 702138 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 23700 438 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
28640646 28640646 PRJNA562549_P_NODE_16067_length_288_cov_0.977974_g15834_i0 PRJNA562549 16067 288 0.977974 2.81656512 Sulfurospirillum 57665 Bacteria Bacteria 125 2.71e-33   NR WP_067173700.1 1581011 g15834 i0 59.6 4.89583333333333 94 38 97.9 0 287 6 29 122 WP_067173700.1 SDR family oxidoreductase [Sulfurospirillum sp. UCH001] diamond 1410 126 0.992063492063492 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;