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contig_metadata

16 rows where bioproject = "PRJNA562549", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 16 ✖

tax_kingdom 1

  • Metazoa · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA562549 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1821570 1821570 PRJNA562549_P_NODE_9022_length_383_cov_2.049689_g8789_i0 PRJNA562549 9022 383 2.049689 7.85030887 Caenorhabditis remanei 31234 Nematoda Nematoda 254 9.33e-63   NTclustered gi|2445394858|ref|XM_053736093.1| 31234 g8789 i0 84.556 67.8067885117493 259 36 67 4 109 365 115 371 Caenorhabditis remanei uncharacterized protein (GCK72_024876), partial mRNA blastn 25970 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
5649471 5649471 PRJNA562549_P_NODE_16545_length_284_cov_1.165919_g16312_i0 PRJNA562549 16545 284 1.165919 3.31120996 Caenorhabditis elegans 6239 Nematoda Nematoda 110 1.53e-19   NTclustered gi|687866011|emb|LK928302.1| 6239 g16312 i0 92.208 43.3450704225352 77 6 27 0 1 77 2471 2395 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000180 blastn 12310 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10750005 10750005 PRJNA562549_P_NODE_19329_length_264_cov_1.798030_g19096_i0 PRJNA562549 19329 264 1.79803 4.7467992 Meloidogyne enterolobii 390850 Nematoda Nematoda 100 5.62e-26   NR CAD2132787.1 390850 g19096 i0 82.1 1.29545454545455 56 10 63.6 0 228 61 1 56 CAD2132787.1 unnamed protein product [Meloidogyne enterolobii] diamond 342 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
12024826 12024826 PRJNA562549_P_NODE_26170_length_230_cov_1.100592_g25937_i0 PRJNA562549 26170 230 1.100592 2.5313616 Strongyloides ratti 34506 Nematoda Nematoda 231 2.4599999999999996e-56   NTclustered gi|1376136641|ref|XM_024648415.1| 34506 g25937 i0 85.088 100.295652173913 228 32 99 2 3 229 160 386 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_1000145800), partial mRNA blastn 23068 231 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12609866 12609866 PRJNA562549_P_NODE_32450_length_209_cov_1.513514_g32217_i0 PRJNA562549 32450 209 1.513514 3.16324426 Opisthokonta 33154 Nematoda Nematoda 108 1.4e-26   NR VBB30565.1 6277 g32217 i0 70.6 4.70813397129187 68 20 97.6 0 5 208 51 118 VBB30565.1 unnamed protein product [Acanthocheilonema viteae] diamond 984 109 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
20947844 20947844 PRJNA562549_P_NODE_22117_length_248_cov_2.262032_g21884_i0 PRJNA562549 22117 248 2.262032 5.60983936 Diploscapter pachys 2018661 Nematoda Nematoda 130 4.97e-33   NR PAV91871.1 2018661 g21884 i0 73.2 0.991935483870968 82 16 99.2 1 1 246 619 694 PAV91871.1 hypothetical protein WR25_15623 isoform B [Diploscapter pachys] diamond 246 130 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
20948008 20948008 PRJNA562549_P_NODE_737_length_1164_cov_10.106074_g675_i0 PRJNA562549 737 1164 10.106074 117.63470136 Metazoa 33208 Nematoda Nematoda 611 1.0799999999999997e-218   NR CAD5220709.1 6326 g675 i0 89.4 38.4329896907216 321 31 82 1 1112 159 1 321 CAD5220709.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 44736 616 0.991883116883117 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
27061374 27061374 PRJNA562549_P_NODE_16322_length_286_cov_0.933333_g16089_i0 PRJNA562549 16322 286 0.933333 2.66933238 Metazoa 33208 Nematoda Nematoda 116 2.23e-29   NR VBB30565.1 6277 g16089 i0 62.8 48.3146853146853 94 35 98.6 0 4 285 97 190 VBB30565.1 unnamed protein product [Acanthocheilonema viteae] diamond 13818 116 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
27945871 27945871 PRJNA562549_P_NODE_11405_length_340_cov_1.397849_g11172_i0 PRJNA562549 11405 340 1.397849 4.7526866 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 2.7199999999999997e-37   NR XP_003377959.1 6334 g11172 i0 63.3 13.8088235294118 98 36 86.5 0 339 46 76 173 XP_003377959.1 60S ribosomal protein L27a [Trichinella spiralis] diamond 4695 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28373959 28373959 PRJNA562549_P_NODE_35866_length_203_cov_0.915493_g35633_i0 PRJNA562549 35866 203 0.915493 1.85845079 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 42.4 0.0291   NR CAD6191633.1 2777116 g35633 i0 35.5 0.916256157635468 62 38 91.6 1 197 12 109 168 CAD6191633.1 unnamed protein product [Caenorhabditis auriculariae] diamond 186 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
28387817 28387817 PRJNA562549_P_NODE_27586_length_224_cov_2.392638_g27353_i0 PRJNA562549 27586 224 2.392638 5.35950912 Metazoa 33208 Nematoda Nematoda 54.3 2.45e-6   NR KAK6053235.1 27828 g27353 i0 33.3 2.93303571428571 75 49 99.1 1 2 223 72 146 KAK6053235.1 EGF-like domain protein [Cooperia oncophora] diamond 657 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
30427143 30427143 PRJNA562549_P_NODE_30753_length_213_cov_1.644737_g30520_i0 PRJNA562549 30753 213 1.644737 3.50328981 Auanema sp. JU1783 2878363 Nematoda Nematoda 66.6 9.74e-11   NR CAI4229175.1 2878363 g30520 i0 46.5 3.98591549295775 71 36 100 2 213 1 140 208 CAI4229175.1 unnamed protein product [Auanema sp. JU1783] diamond 849 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
30584521 30584521 PRJNA562549_P_NODE_33753_length_207_cov_0.890411_g33520_i0 PRJNA562549 33753 207 0.890411 1.84315077 Aphelenchoides besseyi 269767 Nematoda Nematoda 48.5 1.62e-4   NR KAI6211352.1 269767 g33520 i0 54.5 2.34782608695652 33 15 47.8 0 48 146 108 140 KAI6211352.1 hypothetical protein M3Y96_00425100 [Aphelenchoides besseyi] diamond 486 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
30724871 30724871 PRJNA562549_P_NODE_25614_length_232_cov_1.520468_g25381_i0 PRJNA562549 25614 232 1.520468 3.52748576 Rhabditida 6236 Nematoda Nematoda 68.9 1.92e-11   NR EFP01601.1 31234 g25381 i0 67.4 2.7801724137931 43 14 55.6 0 4 132 718 760 EFP01601.1 hypothetical protein CRE_03500 [Caenorhabditis remanei] diamond 645 68.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
31058941 31058941 PRJNA562549_P_NODE_24655_length_236_cov_1.657143_g24422_i0 PRJNA562549 24655 236 1.657143 3.91085748 Aphelenchoides besseyi 269767 Nematoda Nematoda 59.7 3.99e-9   NR KAI6225682.1 269767 g24422 i0 59.1 1.67796610169492 44 18 55.9 0 134 3 40 83 KAI6225682.1 RPB6-like protein [Aphelenchoides besseyi] diamond 396 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31279766 31279766 PRJNA562549_P_NODE_26855_length_227_cov_1.957831_g26622_i0 PRJNA562549 26855 227 1.957831 4.44427637 Soboliphyme baturini 241478 Nematoda Nematoda 92.4 4.040000000000001e-21   NR VDP19351.1 241478 g26622 i0 66.2 5.52422907488987 68 23 89.9 0 226 23 139 206 VDP19351.1 unnamed protein product [Soboliphyme baturini] diamond 1254 92.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;