RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where bioproject = "PRJNA562549", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 22 ✖

tax_clade 1

  • Sar · 22 ✖

bioproject 1

  • PRJNA562549 · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2406287 2406287 PRJNA562549_P_NODE_35902_length_203_cov_0.915493_g35669_i0 PRJNA562549 35902 203 0.915493 1.85845079 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 108 1.08e-25   NR OQS01905.1 74557 g35669 i0 69.7 10.7290640394089 66 20 97.5 0 3 200 338 403 OQS01905.1 coatomer subunit beta' [Thraustotheca clavata] diamond 2178 109 0.990825688073395 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
4958871 4958871 PRJNA562549_P_NODE_16544_length_284_cov_1.170404_g16311_i0 PRJNA562549 16544 284 1.170404 3.32394736 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 144 1.14e-41   NR TMW62875.1 41045 g16311 i0 73.6 8.67253521126761 91 24 96.1 0 11 283 3 93 TMW62875.1 hypothetical protein Poli38472_005493 [Pythium oligandrum] diamond 2463 145 0.993103448275862 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
6923727 6923727 PRJNA562549_P_NODE_19046_length_266_cov_1.765854_g18813_i0 PRJNA562549 19046 266 1.765854 4.69717164 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 139 1.0599999999999998e-37   NR OQS04692.1 74557 g18813 i0 85.2 3.7218045112782 81 12 91.4 0 244 2 1 81 OQS04692.1 aspartyl/Asparaginyl beta-hydroxylase [Thraustotheca clavata] diamond 990 139 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
8783729 8783729 PRJNA562549_P_NODE_21227_length_253_cov_1.458333_g20994_i0 PRJNA562549 21227 253 1.458333 3.68958249 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 265 2.71e-66   NTclustered gi|1917931691|gb|MT811915.1| 82946 g20994 i0 85.714 87.7470355731225 252 34 99 2 1 251 1084 1334 Pythium periplocum culture CBS:532.74 tubulin alpha chain (Tua) mRNA, complete cds blastn 22200 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium periplocum
10750124 10750124 PRJNA562549_P_NODE_31609_length_211_cov_0.866667_g31376_i0 PRJNA562549 31609 211 0.866667 1.82866737 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 100 1.05e-22   NR XP_067821135.1 4779 g31376 i0 69.1 5.80094786729858 68 21 96.7 0 209 6 355 422 XP_067821135.1 hypothetical protein CCR75_001768 [Bremia lactucae] diamond 1224 101 0.99009900990099 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
10750230 10750230 PRJNA562549_P_NODE_8329_length_398_cov_1.477745_g8096_i0 PRJNA562549 8329 398 1.477745 5.8814251 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 198 1.26e-61   NR XP_012205266.1 695850 g8096 i0 72 58.6206030150754 132 37 99.5 0 2 397 92 223 XP_012205266.1 guanine nucleotide-binding protein subunit beta-2-like 1 [Saprolegnia parasitica CBS 223.65] diamond 23331 199 0.994974874371859 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
14574654 14574654 PRJNA562549_P_NODE_14912_length_298_cov_1.624473_g14679_i0 PRJNA562549 14912 298 1.624473 4.84092954 root 1 Root_unresolved Root_unresolved 102 5.7e-23   NR XP_024571672.1 4781 g14679 i0 82 4.97315436241611 61 11 61.4 0 8 190 624 684 XP_024571672.1 polyadenylate-binding protein 1-like isoform 1 [Plasmopara halstedii] diamond 1482 103 0.990291262135922 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
19672278 19672278 PRJNA562549_P_NODE_32096_length_210_cov_0.872483_g31863_i0 PRJNA562549 32096 210 0.872483 1.8322143 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 108 3.3500000000000006e-27   NR TMW55108.1 41045 g31863 i0 85 10.4142857142857 60 9 85.7 0 188 9 130 189 TMW55108.1 hypothetical protein Poli38472_013870 [Pythium oligandrum] diamond 2187 109 0.990825688073395 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
20947787 20947787 PRJNA562549_P_NODE_14937_length_298_cov_1.092827_g14704_i0 PRJNA562549 14937 298 1.092827 3.25662446 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 149 2.7899999999999993e-43   NR XP_024577953.1 4781 g14704 i0 77.8 7.82214765100671 99 22 99.7 0 298 2 22 120 XP_024577953.1 ribosomal protein s4 [Plasmopara halstedii] diamond 2331 150 0.993333333333333 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
23498003 23498003 PRJNA562549_P_NODE_14139_length_306_cov_1.061224_g13906_i0 PRJNA562549 14139 306 1.061224 3.24734544 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 226 1.59e-54   NTclustered gi|301107276|ref|XM_002902675.1| 403677 g13906 i0 81.404 73.921568627451 285 45 92 6 20 300 592 872 Phytophthora infestans T30-4 adenosylhomocysteinase (PITG_10198), partial mRNA blastn 22620 226 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
24772026 24772026 PRJNA562549_P_NODE_31680_length_210_cov_3.006711_g31447_i0 PRJNA562549 31680 210 3.006711 6.3140931 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 220 4.77e-53   NTclustered gi|166047767|emb|CU362882.1| 100861 g31447 i0 92.258 76.5333333333333 155 12 74 0 45 199 98 252 Aphanomyces euteiches cDNA blastn 16072 220 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26699121 26699121 PRJNA562549_P_NODE_29841_length_216_cov_1.612903_g29608_i0 PRJNA562549 29841 216 1.612903 3.48387048 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 51.2 2.01e-5   NR TMW59429.1 41045 g29608 i0 46.5 1.97222222222222 71 33 98.6 2 215 3 164 229 TMW59429.1 hypothetical protein Poli38472_004498 [Pythium oligandrum] diamond 426 51.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
27251023 27251023 PRJNA562549_P_NODE_36403_length_202_cov_0.921986_g36170_i0 PRJNA562549 36403 202 0.921986 1.86241172 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 103 7.27e-25   NR KAG2784318.1 29920 g36170 i0 75.4 9.08910891089109 61 15 90.6 0 19 201 135 195 KAG2784318.1 hypothetical protein Pcac1_g5706 [Phytophthora cactorum] diamond 1836 104 0.990384615384615 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
29005924 29005924 PRJNA562549_P_NODE_29108_length_219_cov_1.120253_g28875_i0 PRJNA562549 29108 219 1.120253 2.45335407 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 69.7 2.99e-13   NR KUF91740.1 4792 g28875 i0 47.3 1.01369863013699 74 35 98.6 2 1 216 41 112 KUF91740.1 hypothetical protein AM588_10004643 [Phytophthora nicotianae] diamond 222 69.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
29257847 29257847 PRJNA562549_P_NODE_21569_length_251_cov_1.957895_g21336_i0 PRJNA562549 21569 251 1.957895 4.91431645 Phytophthora rubi 129364 SAR_Eukaryotes SAR_Eukaryotes 107 2.29e-27   NR KAE9308873.1 129364 g21336 i0 62.2 5.8804780876494 82 31 98 0 248 3 7 88 KAE9308873.1 hypothetical protein PR003_g20640 [Phytophthora rubi] diamond 1476 107 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora rubi
29335130 29335130 PRJNA562549_P_NODE_15089_length_296_cov_2.531915_g14856_i0 PRJNA562549 15089 296 2.531915 7.4944684 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 129 1.4799999999999998e-32   NR XP_024573476.1 4781 g14856 i0 64.1 10.0033783783784 92 33 93.2 0 276 1 533 624 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 2961 129 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
30724872 30724872 PRJNA562549_P_NODE_32214_length_210_cov_0.872483_g31981_i0 PRJNA562549 32214 210 0.872483 1.8322143 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 90.5 3.71e-19   NR GLE05944.1 114742 g31981 i0 67.1 2.01428571428571 70 23 100 0 210 1 337 406 GLE05944.1 hypothetical protein PINS_up015155 [Pythium insidiosum] diamond 423 90.9 0.995599559955996 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31103942 31103942 PRJNA562549_P_NODE_36575_length_202_cov_0.921986_g36342_i0 PRJNA562549 36575 202 0.921986 1.86241172 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 50.8 2.89e-5   NR TMW66516.1 41045 g36342 i0 37.9 6.65346534653465 58 36 86.1 0 179 6 94 151 TMW66516.1 hypothetical protein Poli38472_004281 [Pythium oligandrum] diamond 1344 51.2 0.9921875 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31343142 31343142 PRJNA562549_P_NODE_22436_length_247_cov_1.064516_g22203_i0 PRJNA562549 22436 247 1.064516 2.62935452 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 80.1 6.18e-16   NR RLO11541.1 112090 g22203 i0 48.7 0.947368421052632 78 35 94.7 1 236 3 124 196 RLO11541.1 hypothetical protein DYB28_000642 [Aphanomyces astaci] diamond 234 80.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32527797 32527797 PRJNA562549_P_NODE_24039_length_239_cov_1.460674_g23806_i0 PRJNA562549 24039 239 1.460674 3.49101086 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 124 3.43e-34   NR KAJ0410394.1 114742 g23806 i0 72.7 6.82845188284519 77 21 96.7 0 238 8 51 127 KAJ0410394.1 hypothetical protein P43SY_002726 [Pythium insidiosum] diamond 1632 125 0.992 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
32559420 32559420 PRJNA562549_P_NODE_21419_length_252_cov_1.701571_g21186_i0 PRJNA562549 21419 252 1.701571 4.28795892 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 85.1 4.81e-17   NR CCI43303.1 65357 g21186 i0 62 13.8095238095238 71 26 83.3 1 211 2 409 479 CCI43303.1 unnamed protein product [Albugo candida] diamond 3480 85.9 0.990686845168801 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32828894 32828894 PRJNA562549_P_NODE_31560_length_211_cov_0.866667_g31327_i0 PRJNA562549 31560 211 0.866667 1.82866737 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 92.4 5.47e-21   NR KAJ0405492.1 114742 g31327 i0 57.1 2.98578199052133 70 30 99.5 0 2 211 90 159 KAJ0405492.1 hypothetical protein ATCC90586_000155 [Pythium insidiosum] diamond 630 92.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;