RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA562549", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA562549 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26635918 26635918 PRJNA562549_P_NODE_34241_length_206_cov_0.896552_g34008_i0 PRJNA562549 34241 206 0.896552 1.84689712 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 79 3.77e-15   NR SPR00809.1 37360 g34008 i0 48.5 0.961165048543689 66 34 96.1 0 206 9 385 450 SPR00809.1 unnamed protein product [Plasmodiophora brassicae] diamond 198 79 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32577070 32577070 PRJNA562549_P_NODE_7199_length_429_cov_2.448370_g6966_i0 PRJNA562549 7199 429 2.44837 10.5035073 Paramarteilia canceri 2844372 SAR_Eukaryotes SAR_Eukaryotes 92.8 1.86e-20   NR MES1904754.1 2844372 g6966 i0 37.4 2.88111888111888 147 75 90.9 4 412 23 42 188 MES1904754.1 hypothetical protein [Paramarteilia canceri] diamond 1236 92.8 1 Eukaryota Sar   Endomyxa Ascetosporea Paramyxida Marteiliidae Paramarteilia Paramarteilia canceri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;