RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA562549", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA562549 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28815765 28815765 PRJNA562549_P_NODE_30468_length_214_cov_1.549020_g30235_i0 PRJNA562549 30468 214 1.54902 3.3149028 Lentisphaerota bacterium 1932692 Bacteria Bacteria 42 0.0484   NR MBE6357758.1 1932692 g30235 i0 42.2 0.630841121495327 45 22 57.5 1 53 175 347 391 MBE6357758.1 glycosyltransferase family 39 protein [Lentisphaerota bacterium] diamond 135 42 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29510557 29510557 PRJNA562549_P_NODE_21210_length_253_cov_1.687500_g20977_i0 PRJNA562549 21210 253 1.6875 4.269375 Lentisphaerota bacterium 1932692 Bacteria Bacteria 46.6 0.0018600000000000001   NR MBE6406923.1 1932692 g20977 i0 52.2 1.64822134387352 46 22 54.5 0 250 113 267 312 MBE6406923.1 tetratricopeptide repeat protein [Lentisphaerota bacterium] diamond 417 46.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;