contig_metadata
12 rows where bioproject = "PRJNA561212" and tax_phylum = "Thermodesulfobacteriota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6234263 | 6234263 | PRJNA561212_P_NODE_16845_length_276_cov_1.458128_g16634_i0 | PRJNA561212 | 16845 | 276 | 1.458128 | 4.02443328 | root | 1 | Root_unresolved | Root_unresolved | 279 | 1.07e-70 | NTclustered | gi|470477500|ref|NR_076387.1| | 19 | g16634 | i0 | 86.538 | 158.898550724638 | 260 | 27 | 93 | 7 | 10 | 267 | 1983 | 1730 | Pelobacter carbinolicus strain Gra Bd 1 23S ribosomal RNA gene, complete sequence | blastn | 43856 | 281 | 0.99288256227758 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Desulfuromonadales | Syntrophotaleaceae | Syntrophotalea | Syntrophotalea carbinolica | ||
| 6234275 | 6234275 | PRJNA561212_P_NODE_3845_length_564_cov_0.881874_g3638_i0 | PRJNA561212 | 3845 | 564 | 0.881874 | 4.97376936 | Nitratidesulfovibrio | 2802295 | Bacteria | Bacteria | 989 | 0 | NTclustered | gi|2791413552|dbj|AP036014.1| | 2009266 | g3638 | i0 | 99.449 | 277 | 544 | 3 | 96 | 0 | 10 | 553 | 226840 | 226297 | Nitratidesulfovibrio sp. HK-II DNA, complete genome | blastn | 156228 | 994 | 0.994969818913481 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Nitratidesulfovibrio | Nitratidesulfovibrio sp. HK-II | ||
| 7508647 | 7508647 | PRJNA561212_P_NODE_14886_length_291_cov_1.279817_g14675_i0 | PRJNA561212 | 14886 | 291 | 1.279817 | 3.72426747 | Desulfocurvibacter | 2582840 | Bacteria | Bacteria | 283 | 8.78e-72 | NTclustered | gi|470489697|ref|NR_076945.1| | 873 | g14675 | i0 | 85.348 | 87.9209621993127 | 273 | 40 | 94 | 0 | 10 | 282 | 496 | 224 | Desulfovibrio africanus strain Walvis Bay 23S ribosomal RNA gene, complete sequence | blastn | 25585 | 283 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfocurvibacter | Desulfocurvibacter africanus | ||
| 10749861 | 10749861 | PRJNA561212_P_NODE_6709_length_425_cov_1.909091_g6498_i0 | PRJNA561212 | 6709 | 425 | 1.909091 | 8.11363675 | Desulfuromonadaceae bacterium | 2099677 | Bacteria | Bacteria | 218 | 1.6e-64 | NR | MDD2735523.1 | 2099677 | g6498 | i0 | 75.4 | 19.5811764705882 | 130 | 32 | 91.8 | 0 | 11 | 400 | 198 | 327 | MDD2735523.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [Desulfuromonadaceae bacterium] | diamond | 8322 | 218 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Desulfuromonadales | Desulfuromonadaceae | Desulfuromonadaceae bacterium | |||
| 15848093 | 15848093 | PRJNA561212_P_NODE_11193_length_331_cov_1.290698_g10982_i0 | PRJNA561212 | 11193 | 331 | 1.290698 | 4.27221038 | Desulfovibrionales bacterium | 2448050 | Bacteria | Bacteria | 139 | 7.09e-37 | NR | MDK2957425.1 | 2448050 | g10982 | i0 | 63.6 | 4.84894259818731 | 107 | 39 | 97 | 0 | 10 | 330 | 207 | 313 | MDK2957425.1 ammonium transporter, Amt family [Desulfovibrionales bacterium] | diamond | 1605 | 139 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionales bacterium | ||||
| 19671822 | 19671822 | PRJNA561212_P_NODE_15556_length_286_cov_1.056338_g15345_i0 | PRJNA561212 | 15556 | 286 | 1.056338 | 3.02112668 | Nitratidesulfovibrio sp. HK-II | 2009266 | Bacteria | Bacteria | 496 | 1.02e-135 | NTclustered | gi|2791413552|dbj|AP036014.1| | 2009266 | g15345 | i0 | 100 | 171.195804195804 | 268 | 0 | 94 | 0 | 10 | 277 | 225787 | 225520 | Nitratidesulfovibrio sp. HK-II DNA, complete genome | blastn | 48962 | 496 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Nitratidesulfovibrio | Nitratidesulfovibrio sp. HK-II | ||
| 22222531 | 22222531 | PRJNA561212_P_NODE_3298_length_608_cov_2.216822_g3092_i0 | PRJNA561212 | 3298 | 608 | 2.216822 | 13.47827776 | Desulfopila aestuarii | 231440 | Bacteria | Bacteria | 221 | 4.45e-65 | NR | WP_084554044.1 | 231440 | g3092 | i0 | 61.4 | 1.63322368421053 | 166 | 64 | 81.9 | 0 | 503 | 6 | 61 | 226 | WP_084554044.1 NAD-dependent malic enzyme [Desulfopila aestuarii] | diamond | 993 | 221 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfocapsaceae | Desulfopila | Desulfopila aestuarii | ||
| 23497782 | 23497782 | PRJNA561212_P_NODE_22199_length_249_cov_0.886364_g21988_i0 | PRJNA561212 | 22199 | 249 | 0.886364 | 2.20704636 | Nitratidesulfovibrio sp. HK-II | 2009266 | Bacteria | Bacteria | 424 | 4.15e-114 | NTclustered | gi|2791413552|dbj|AP036014.1| | 2009266 | g21988 | i0 | 99.569 | 335.534136546185 | 232 | 1 | 93 | 0 | 9 | 240 | 227377 | 227608 | Nitratidesulfovibrio sp. HK-II DNA, complete genome | blastn | 83548 | 424 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Nitratidesulfovibrio | Nitratidesulfovibrio sp. HK-II | ||
| 27029730 | 27029730 | PRJNA561212_P_NODE_4162_length_543_cov_1.280851_g3954_i0 | PRJNA561212 | 4162 | 543 | 1.280851 | 6.95502093 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 48.1 | 0.00534 | NR | WP_054032100.1 | 1185843 | g3954 | i0 | 36 | 1.34254143646409 | 75 | 46 | 40.3 | 1 | 221 | 3 | 145 | 219 | WP_054032100.1 acyl-[acyl-carrier-protein] thioesterase [Desulfatitalea tepidiphila] | diamond | 729 | 48.1 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfosarcinaceae | Desulfatitalea | Desulfatitalea tepidiphila | ||
| 28815692 | 28815692 | PRJNA561212_P_NODE_20868_length_252_cov_0.871508_g20657_i0 | PRJNA561212 | 20868 | 252 | 0.871508 | 2.19620016 | Desulfobulbaceae bacterium | 2053307 | Bacteria | Bacteria | 76.3 | 5.44e-14 | NR | MDH3360222.1 | 2053307 | g20657 | i0 | 43.6 | 0.928571428571429 | 78 | 36 | 92.9 | 1 | 251 | 18 | 96 | 165 | MDH3360222.1 PatB family C-S lyase [Desulfobulbaceae bacterium] | diamond | 234 | 76.3 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbaceae bacterium | |||
| 29555950 | 29555950 | PRJNA561212_P_NODE_17170_length_274_cov_1.079602_g16959_i0 | PRJNA561212 | 17170 | 274 | 1.079602 | 2.95810948 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 76.3 | 8.37e-14 | NR | WP_022854294.1 | 501497 | g16959 | i0 | 47.6 | 4.74087591240876 | 84 | 39 | 92 | 1 | 262 | 11 | 336 | 414 | WP_022854294.1 threonine synthase [Thermodesulfatator atlanticus] | diamond | 1299 | 77 | 0.990909090909091 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteria | Thermodesulfobacteriales | Thermodesulfatatoraceae | Thermodesulfatator | Thermodesulfatator atlanticus | ||
| 30868904 | 30868904 | PRJNA561212_P_NODE_8754_length_371_cov_1.637584_g8543_i0 | PRJNA561212 | 8754 | 371 | 1.637584 | 6.07543664 | Desulfobulbaceae bacterium AR3 | 2202841 | Bacteria | Bacteria | 77 | 5.14e-14 | NR | MCI5144549.1 | 2202841 | g8543 | i0 | 36.8 | 0.946091644204852 | 117 | 70 | 92.2 | 2 | 351 | 10 | 44 | 159 | MCI5144549.1 endonuclease/exonuclease/phosphatase family protein [Candidatus Electrothrix sp. AR3] | diamond | 351 | 77 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbaceae bacterium AR3 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;