RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA561212" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA561212 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26889501 26889501 PRJNA561212_P_NODE_6661_length_427_cov_1.437853_g6450_i0 PRJNA561212 6661 427 1.437853 6.13963231 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 100 3.09e-22   NR ETO20721.1 46433 g6450 i0 49.2 1.69320843091335 126 61 88.5 2 391 14 139 261 ETO20721.1 hypothetical protein RFI_16496 [Reticulomyxa filosa] diamond 723 100 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29542097 29542097 PRJNA561212_P_NODE_24290_length_245_cov_0.906977_g24079_i0 PRJNA561212 24290 245 0.906977 2.22209365 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 56.2 1.99e-7   NR ETO06966.1 46433 g24079 i0 36.6 2.03265306122449 71 29 67.3 1 56 220 18 88 ETO06966.1 hypothetical protein RFI_30426 [Reticulomyxa filosa] diamond 498 56.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29605044 29605044 PRJNA561212_P_NODE_950_length_1094_cov_1.278159_g819_i0 PRJNA561212 950 1094 1.278159 13.98305946 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 72.4 8.9e-10   NR ETO04451.1 46433 g819 i0 27.6 0.46617915904936 170 105 45.5 4 630 133 97 252 ETO04451.1 hypothetical protein RFI_32946, partial [Reticulomyxa filosa] diamond 510 72.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;