RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA561212", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA561212 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29808585 29808585 PRJNA561212_P_NODE_4871_length_501_cov_2.023364_g4661_i0 PRJNA561212 4871 501 2.023364 10.13705364 root 1 Root_unresolved Root_unresolved 106 1.67e-24   NR MEA3199455.1 1906666 g4661 i0 46.7 4.31736526946108 120 63 71.9 1 363 4 3 121 MEA3199455.1 3-hydroxybutyryl-CoA dehydrogenase [Thermoplasmata archaeon] diamond 2163 106 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30963918 30963918 PRJNA561212_P_NODE_5034_length_493_cov_1.795238_g4823_i0 PRJNA561212 5034 493 1.795238 8.85052334 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 194 1.48e-60   NR HJM77902.1 2670411 g4823 i0 78.8 2.15415821501014 118 25 71.8 0 354 1 5 122 HJM77902.1 3,4-dihydroxy-2-butanone-4-phosphate synthase [Candidatus Thalassarchaeaceae archaeon] diamond 1062 194 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon
31831230 31831230 PRJNA561212_P_NODE_19557_length_257_cov_1.179348_g19346_i0 PRJNA561212 19557 257 1.179348 3.03092436 Archaea 2157 Archaea Archaea 60.5 2.63e-8   NR MDP6889438.1 2670411 g19346 i0 44.1 1.37743190661479 59 28 68.9 1 80 256 53 106 MDP6889438.1 putative Ig domain-containing protein [Candidatus Thalassarchaeaceae archaeon] diamond 354 60.5 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;