RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA561212", tax_clade = "Sar" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA561212 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25357043 25357043 PRJNA561212_P_NODE_860_length_1134_cov_9.756833_g735_i0 PRJNA561212 860 1134 9.756833 110.64248622 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 476 5.829999999999998e-166   NR XP_002774056.1 423536 g735 i0 73.1 1.65873015873016 312 83 82.3 1 1068 136 4 315 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 1881 476 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31452042 31452042 PRJNA561212_P_NODE_5816_length_458_cov_1.898701_g5605_i0 PRJNA561212 5816 458 1.898701 8.69605058 Bigyra 2683628 SAR_Eukaryotes SAR_Eukaryotes 180 3.9299999999999985e-55   NR KAF4738314.1 32597 g5605 i0 65.6 7.98471615720524 122 42 79.9 0 85 450 1 122 KAF4738314.1 hypothetical protein FOZ62_003910, partial [Perkinsus olseni] diamond 3657 181 0.994475138121547 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32021283 32021283 PRJNA561212_P_NODE_8198_length_383_cov_1.409677_g7987_i0 PRJNA561212 8198 383 1.409677 5.39906291 Bigyra 2683628 SAR_Eukaryotes SAR_Eukaryotes 175 4.85e-49   NR KAF4671416.1 32597 g7987 i0 62.8 5.78851174934726 121 42 94.8 1 368 6 64 181 KAF4671416.1 hypothetical protein FOZ61_000040 [Perkinsus olseni] diamond 2217 176 0.994318181818182 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;