RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA561212", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 10 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 10 ✖

bioproject 1

  • PRJNA561212 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3096532 3096532 PRJNA561212_P_NODE_9643_length_355_cov_0.872340_g9432_i0 PRJNA561212 9643 355 0.87234 3.096807 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 555 2.0999999999999995e-153   NTclustered gi|2874253811|emb|OY969795.1| 464461 g9432 i0 95.665 107.729577464789 346 14 97 1 10 355 655845 656189 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 38244 555 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
9473896 9473896 PRJNA561212_P_NODE_168_length_2055_cov_4.857719_g132_i0 PRJNA561212 168 2055 4.857719 99.82612545 root 1 Root_unresolved Root_unresolved 786 9.259999999999999e-279   NR WP_013182645.1 71667 g132 i0 62.3 55.0919708029197 599 219 87.2 5 1840 50 10 603 WP_013182645.1 phosphoenolpyruvate carboxykinase (GTP) [Waddlia chondrophila] diamond 113214 788 0.99746192893401 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
12024337 12024337 PRJNA561212_P_NODE_11810_length_323_cov_0.904000_g11599_i0 PRJNA561212 11810 323 0.904 2.91992 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 250 1e-61   NTclustered gi|2874253811|emb|OY969795.1| 464461 g11599 i0 81.672 32.4953560371517 311 47 94 8 10 314 2059953 2060259 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 10496 250 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
12024349 12024349 PRJNA561212_P_NODE_12570_length_314_cov_1.228216_g12359_i0 PRJNA561212 12570 314 1.228216 3.85659824 Parachlamydiales bacterium 2052178 Bacteria Bacteria 259 1.6100000000000002e-64   NTclustered gi|2874253843|emb|OY969899.1| 2052178 g12359 i0 85 138.041401273885 260 34 82 5 12 269 2631817 2632073 MAG: Parachlamydiales bacterium isolate MFD00082.bin.c.1 genome assembly, chromosome: 1 blastn 43345 259 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
12024666 12024666 PRJNA561212_P_NODE_9630_length_355_cov_1.262411_g9419_i0 PRJNA561212 9630 355 1.262411 4.48155905 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 496 1.29e-135   NTclustered gi|2874253811|emb|OY969795.1| 464461 g9419 i0 93.452 165.397183098592 336 19 94 3 9 343 654397 654730 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 58716 496 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
16433401 16433401 PRJNA561212_P_NODE_8493_length_377_cov_1.207237_g8282_i0 PRJNA561212 8493 377 1.207237 4.55128349 Waddlia 71666 Bacteria Bacteria 276 1.96e-69   NTclustered gi|297375547|gb|CP001928.1| 716544 g8282 i0 81.111 144.596816976127 360 55 94 11 14 368 1839144 1838793 Waddlia chondrophila WSU 86-1044, complete genome blastn 54513 276 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
19671898 19671898 PRJNA561212_P_NODE_19636_length_256_cov_1.612022_g19425_i0 PRJNA561212 19636 256 1.612022 4.12677632 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 182 2.84e-41   NTclustered gi|2874253811|emb|OY969795.1| 464461 g19425 i0 80.658 31.5234375 243 39 93 8 10 247 2058798 2059037 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 8070 182 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
22222338 22222338 PRJNA561212_P_NODE_12458_length_315_cov_1.371901_g12247_i0 PRJNA561212 12458 315 1.371901 4.32148815 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 453 6.92e-123   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g12247 i0 94.257 155.911111111111 296 17 94 0 10 305 835843 836138 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 49112 453 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
24771647 24771647 PRJNA561212_P_NODE_2080_length_756_cov_2.455344_g1885_i0 PRJNA561212 2080 756 2.455344 18.56240064 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 778 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g1885 i0 86.95 106.57671957672 705 77 92 13 1 699 654305 653610 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 80572 778 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
28942552 28942552 PRJNA561212_P_NODE_7308_length_406_cov_2.108108_g7097_i0 PRJNA561212 7308 406 2.108108 8.55891848 Candidatus Acheromyda pituitae 3076874 Bacteria Bacteria 88.6 6.33e-18   NR MBX3718576.1 3076874 g7097 i0 54.7 0.554187192118227 75 33 55.4 1 177 401 1 74 MBX3718576.1 NAD(P)H-quinone oxidoreductase [Candidatus Acheromyda pituitae] diamond 225 88.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Acheromyda Candidatus Acheromyda pituitae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;