RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA561212", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA561212 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5649250 5649250 PRJNA561212_P_NODE_24065_length_245_cov_1.720930_g23854_i0 PRJNA561212 24065 245 1.72093 4.2162785 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2806459960|ref|XM_068504050.1| 1144522 g23854 i0 94.444 0.261224489795918 36 1 15 1 49 84 1751 1785 Tritrichomonas foetus uncharacterized protein (TRFO_24971), partial mRNA blastn 64 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29289523 29289523 PRJNA561212_P_NODE_11289_length_330_cov_0.875486_g11078_i0 PRJNA561212 11289 330 0.875486 2.8891038 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 49.3 4.69e-4   NR XP_001323917.1 412133 g11078 i0 50 0.4 44 21 39.1 1 319 191 224 267 XP_001323917.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 132 49.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31121372 31121372 PRJNA561212_P_NODE_16435_length_279_cov_1.587379_g16224_i0 PRJNA561212 16435 279 1.587379 4.42878741 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47.8 9.53e-5   NR XP_001579255.1 412133 g16224 i0 50 0.494623655913978 46 20 49.5 1 98 235 4 46 XP_001579255.1 associate of C-MYC AMY-1 family [Trichomonas vaginalis G3] diamond 138 47.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;