RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA561212", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA561212 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26730489 26730489 PRJNA561212_P_NODE_10481_length_341_cov_1.880597_g10270_i0 PRJNA561212 10481 341 1.880597 6.41283577 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 79 1.01e-14   NR MCE2756233.1 2026749 g10270 i0 44.1 1.70674486803519 111 50 93.3 4 8 325 44 147 MCE2756233.1 tartrate-resistant acid phosphatase type 5 family protein [Ignavibacteriota bacterium] diamond 582 79 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
30724867 30724867 PRJNA561212_P_NODE_23814_length_246_cov_0.901734_g23603_i0 PRJNA561212 23814 246 0.901734 2.21826564 Bacteria 2 Bacteria Bacteria 62.8 3.31e-9   NR MBI3193019.1 2026749 g23603 i0 50 2.74390243902439 62 30 74.4 1 14 196 3 64 MBI3193019.1 right-handed parallel beta-helix repeat-containing protein [Ignavibacteriota bacterium] diamond 675 63.2 0.993670886075949 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
32639509 32639509 PRJNA561212_P_NODE_3060_length_629_cov_1.205036_g2855_i0 PRJNA561212 3060 629 1.205036 7.57967644 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 50.8 9.98e-4   NR MDQ7817295.1 2614255 g2855 i0 24.6 0.853736089030207 179 127 83 4 558 37 22 197 MDQ7817295.1 protein phosphatase CheZ [Melioribacteraceae bacterium] diamond 537 50.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;