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contig_metadata

3 rows where bioproject = "PRJNA561212", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJNA561212 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9474102 9474102 PRJNA561212_P_NODE_6528_length_431_cov_2.877095_g6317_i0 PRJNA561212 6528 431 2.877095 12.40027945 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 187 1.0899999999999997e-42   NTclustered gi|1200177733|gb|MF039367.1| 190325 g6317 i0 96.46 57.2134570765661 113 4 62 0 311 423 4888 4776 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24659 187 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
15848216 15848216 PRJNA561212_P_NODE_17673_length_270_cov_1.786802_g17462_i0 PRJNA561212 17673 270 1.786802 4.8243654 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 191 5.03e-44   NTclustered gi|1200177733|gb|MF039367.1| 190325 g17462 i0 91.367 46.3518518518519 139 12 51 0 86 224 4750 4888 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12515 191 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
24082642 24082642 PRJNA561212_P_NODE_20379_length_253_cov_0.866667_g20168_i0 PRJNA561212 20379 253 0.866667 2.19266751 Collodictyon 190324 Root_unresolved Root_unresolved 87.9 6.29e-13   NTclustered gi|1200177725|gb|MF039359.1| 190325 g20168 i0 83 5.15415019762846 100 14 39 3 140 238 2271 2368 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1304 87.9 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;