RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA561212", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Hydrothermota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrothermota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA561212 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29605034 29605034 PRJNA561212_P_NODE_24550_length_245_cov_0.866279_g24339_i0 PRJNA561212 24550 245 0.866279 2.12238355 Candidatus Hydrothermia bacterium 3014280 Bacteria Bacteria 81.6 3.93e-18   NR MDT7879917.1 3014280 g24339 i0 62.1 4.22448979591837 66 25 80.8 0 213 16 7 72 MDT7879917.1 30S ribosomal protein S15 [Candidatus Hydrothermia bacterium] diamond 1035 81.6 1 Bacteria Bacteria candidate phyla   Candidatus Hydrothermota Candidatus Hydrothermia       Candidatus Hydrothermia bacterium
29889699 29889699 PRJNA561212_P_NODE_5591_length_467_cov_2.829949_g5380_i0 PRJNA561212 5591 467 2.829949 13.21586183 Candidatus Hydrothermia bacterium 3014280 Bacteria Bacteria 131 4.63e-36   NR MDT7880671.1 3014280 g5380 i0 61 2.94218415417559 118 45 75.8 1 454 101 6 122 MDT7880671.1 30S ribosomal protein S12 [Candidatus Hydrothermia bacterium] diamond 1374 131 1 Bacteria Bacteria candidate phyla   Candidatus Hydrothermota Candidatus Hydrothermia       Candidatus Hydrothermia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;