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contig_metadata

28 rows where bioproject = "PRJNA561138" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561138 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10749457 10749457 PRJNA561138_P_NODE_28349_length_244_cov_0.900585_g28154_i0 PRJNA561138 28349 244 0.900585 2.1974274 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 156 4.0399999999999996e-42   NR RYD68153.1 2026800 g28154 i0 87.7 0.995901639344262 81 10 99.6 0 2 244 273 353 RYD68153.1 MAG: ribonucleoside-diphosphate reductase subunit alpha [Verrucomicrobiaceae bacterium] diamond 243 156 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
15847859 15847859 PRJNA561138_P_NODE_17593_length_312_cov_0.928870_g17398_i0 PRJNA561138 17593 312 0.92887 2.8980744 Bacteria 2 Bacteria Bacteria 144 3.37e-38   NR WP_078814839.1 48467 g17398 i0 66.3 7.95192307692308 104 34 99 1 3 311 70 173 WP_078814839.1 glutamine--tRNA ligase/YqeY domain fusion protein [Prosthecobacter debontii] diamond 2481 145 0.993103448275862 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii
21532630 21532630 PRJNA561138_P_NODE_17177_length_316_cov_0.950617_g16982_i0 PRJNA561138 17177 316 0.950617 3.00394972 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 149 4.67e-39   NR RFC44833.1 2026799 g16982 i0 63.1 5.91455696202532 103 38 97.8 0 3 311 129 231 RFC44833.1 MAG: Glucose/arabinose dehydrogenase [Verrucomicrobiota bacterium] diamond 1869 149 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
22222195 22222195 PRJNA561138_P_NODE_26718_length_247_cov_0.885057_g26523_i0 PRJNA561138 26718 247 0.885057 2.18609079 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 63.9 1.03e-5   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g26523 i0 100 11.8259109311741 34 0 15 0 143 176 182369 182402 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 2921 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
24082556 24082556 PRJNA561138_P_NODE_19819_length_291_cov_0.876147_g19624_i0 PRJNA561138 19819 291 0.876147 2.54958777 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 118 2.04e-28   NR RYD68153.1 2026800 g19624 i0 80.8 0.752577319587629 73 14 75.3 0 220 2 1 73 RYD68153.1 MAG: ribonucleoside-diphosphate reductase subunit alpha [Verrucomicrobiaceae bacterium] diamond 219 118 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26604014 26604014 PRJNA561138_P_NODE_28541_length_244_cov_0.900585_g28346_i0 PRJNA561138 28541 244 0.900585 2.1974274 Prosthecobacter sp. SYSU 5D2 3134134 Bacteria Bacteria 158 1.02e-42   NR WP_346333053.1 3134134 g28346 i0 90 0.983606557377049 80 8 98.4 0 243 4 691 770 WP_346333053.1 PSD1 and planctomycete cytochrome C domain-containing protein [Prosthecobacter sp. SYSU 5D2] diamond 240 158 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp. SYSU 5D2
26762505 26762505 PRJNA561138_P_NODE_13241_length_359_cov_1.346154_g13046_i0 PRJNA561138 13241 359 1.346154 4.83269286 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 174 4.51e-53   NR RYD67745.1 2026800 g13046 i0 75 0.902506963788301 108 27 90.3 0 325 2 1 108 RYD67745.1 MAG: hypothetical protein EOP83_02170, partial [Verrucomicrobiaceae bacterium] diamond 324 174 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26826096 26826096 PRJNA561138_P_NODE_22821_length_265_cov_1.203125_g22626_i0 PRJNA561138 22821 265 1.203125 3.18828125 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 45.8 0.00417   NR RYD65907.1 2026800 g22626 i0 28.2 0.962264150943396 85 54 88.3 1 28 261 40 124 RYD65907.1 MAG: hypothetical protein EOP83_06340, partial [Verrucomicrobiaceae bacterium] diamond 255 45.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26857951 26857951 PRJNA561138_P_NODE_28961_length_243_cov_0.905882_g28766_i0 PRJNA561138 28961 243 0.905882 2.20129326 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 48.5 8.87e-5   NR RYD61952.1 2026800 g28766 i0 40.5 0.975308641975309 79 34 97.5 1 238 2 3 68 RYD61952.1 MAG: hypothetical protein EOP83_15835 [Verrucomicrobiaceae bacterium] diamond 237 48.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27805798 27805798 PRJNA561138_P_NODE_7244_length_462_cov_1.154242_g7050_i0 PRJNA561138 7244 462 1.154242 5.33259804 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 88.2 3.3e-17   NR RYD46570.1 2026800 g7050 i0 47.5 0.766233766233766 118 56 75.3 4 9 356 236 349 RYD46570.1 MAG: hypothetical protein EOP83_29440, partial [Verrucomicrobiaceae bacterium] diamond 354 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28153132 28153132 PRJNA561138_P_NODE_24585_length_251_cov_0.865169_g24390_i0 PRJNA561138 24585 251 0.865169 2.17157419 Prosthecobacter sp. SYSU 5D2 3134134 Bacteria Bacteria 89.7 1.23e-18   NR WP_346332532.1 3134134 g24390 i0 63 0.872509960159363 73 27 87.3 0 2 220 122 194 WP_346332532.1 immunoglobulin domain-containing protein [Prosthecobacter sp. SYSU 5D2] diamond 219 89.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp. SYSU 5D2
28184259 28184259 PRJNA561138_P_NODE_14406_length_345_cov_1.132353_g14211_i0 PRJNA561138 14406 345 1.132353 3.90661785 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 65.1 1.65e-9   NR RYD68026.1 2026800 g14211 i0 39.8 0.982608695652174 113 49 91.3 5 4 318 135 236 RYD68026.1 MAG: hypothetical protein EOP83_01630 [Verrucomicrobiaceae bacterium] diamond 339 65.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28184263 28184263 PRJNA561138_P_NODE_22826_length_265_cov_1.203125_g22631_i0 PRJNA561138 22826 265 1.203125 3.18828125 Nibricoccus sp. IMCC34717 3034021 Bacteria Bacteria 57.4 3.2e-7   NR WP_404420589.1 3034021 g22631 i0 54.9 0.577358490566038 51 23 57.7 0 69 221 110 160 WP_404420589.1 radical SAM protein [Nibricoccus sp. IMCC34717] diamond 153 57.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus sp. IMCC34717
28342372 28342372 PRJNA561138_P_NODE_19106_length_297_cov_1.375000_g18911_i0 PRJNA561138 19106 297 1.375 4.08375 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 142 1.81e-38   NR RYD60381.1 2026800 g18911 i0 68.4 1.97979797979798 98 30 99 1 2 295 244 340 RYD60381.1 MAG: ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobiaceae bacterium] diamond 588 142 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29068745 29068745 PRJNA561138_P_NODE_12068_length_374_cov_1.023256_g11873_i0 PRJNA561138 12068 374 1.023256 3.82697744 Opitutaceae bacterium 2006848 Bacteria Bacteria 188 5.439999999999998e-55   NR MDE0770479.1 2006848 g11873 i0 73.3 0.962566844919786 120 32 96.3 0 361 2 223 342 MDE0770479.1 serine hydrolase [Opitutaceae bacterium] diamond 360 188 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29415782 29415782 PRJNA561138_P_NODE_10829_length_391_cov_3.040881_g10634_i0 PRJNA561138 10829 391 3.040881 11.88984471 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 139 1.0799999999999998e-37   NR RYD49402.1 2026800 g10634 i0 50.4 1.03580562659847 135 62 99.7 2 391 2 58 192 RYD49402.1 MAG: hypothetical protein EOP83_25205, partial [Verrucomicrobiaceae bacterium] diamond 405 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29447260 29447260 PRJNA561138_P_NODE_28610_length_244_cov_0.900585_g28415_i0 PRJNA561138 28610 244 0.900585 2.1974274 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 67.8 1.49e-11   NR RYD45951.1 2026800 g28415 i0 56.1 1.38934426229508 66 27 81.1 1 46 243 1 64 RYD45951.1 MAG: VWA domain-containing protein [Verrucomicrobiaceae bacterium] diamond 339 67.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29447261 29447261 PRJNA561138_P_NODE_6310_length_493_cov_1.321429_g6116_i0 PRJNA561138 6310 493 1.321429 6.51464497 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 128 1.8399999999999998e-31   NR RYD53772.1 2026800 g6116 i0 70.5 0.535496957403651 88 26 53.5 0 491 228 390 477 RYD53772.1 MAG: hypothetical protein EOP83_22935 [Verrucomicrobiaceae bacterium] diamond 264 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29510497 29510497 PRJNA561138_P_NODE_24690_length_251_cov_0.865169_g24495_i0 PRJNA561138 24690 251 0.865169 2.17157419 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 73.2 2.33e-14   NR RYD67981.1 2026800 g24495 i0 58.6 0.693227091633466 58 24 69.3 0 64 237 1 58 RYD67981.1 MAG: hypothetical protein EOP83_01730 [Verrucomicrobiaceae bacterium] diamond 174 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29542069 29542069 PRJNA561138_P_NODE_14070_length_349_cov_1.115942_g13875_i0 PRJNA561138 14070 349 1.115942 3.89463758 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62.8 7.55e-9   NR MEM7013420.1 2026799 g13875 i0 28.8 1.01432664756447 118 77 95.4 1 9 341 25 142 MEM7013420.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 354 62.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29605009 29605009 PRJNA561138_P_NODE_24790_length_251_cov_0.865169_g24595_i0 PRJNA561138 24790 251 0.865169 2.17157419 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 69.3 4.68e-12   NR RYD60811.1 2026800 g24595 i0 42 1.9601593625498 81 47 96.8 0 3 245 141 221 RYD60811.1 MAG: hypothetical protein EOP83_18535, partial [Verrucomicrobiaceae bacterium] diamond 492 69.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29763042 29763042 PRJNA561138_P_NODE_15871_length_329_cov_1.539062_g15676_i0 PRJNA561138 15871 329 1.539062 5.06351398 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 168 1.7299999999999994e-48   NR RYD62022.1 2026800 g15676 i0 70.6 1.98784194528875 109 32 99.4 0 328 2 75 183 RYD62022.1 MAG: hypothetical protein EOP83_15660 [Verrucomicrobiaceae bacterium] diamond 654 168 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30427067 30427067 PRJNA561138_P_NODE_24333_length_251_cov_2.162921_g24138_i0 PRJNA561138 24333 251 2.162921 5.42893171 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 50.8 5.27e-5   NR RYD68574.1 2026800 g24138 i0 39.2 0.944223107569721 79 40 87.3 2 222 4 23 99 RYD68574.1 MAG: hypothetical protein EOP83_00575 [Verrucomicrobiaceae bacterium] diamond 237 50.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31152929 31152929 PRJNA561138_P_NODE_15695_length_331_cov_1.372093_g15500_i0 PRJNA561138 15695 331 1.372093 4.54162783 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 49.3 4.84e-4   NR RYD62475.1 2026800 g15500 i0 35.5 0.842900302114804 93 52 83.4 3 44 319 47 132 RYD62475.1 MAG: hypothetical protein EOP83_14480, partial [Verrucomicrobiaceae bacterium] diamond 279 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31248121 31248121 PRJNA561138_P_NODE_15915_length_329_cov_1.203125_g15720_i0 PRJNA561138 15915 329 1.203125 3.95828125 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 104 7.66e-26   NR RYD63601.1 2026800 g15720 i0 57.1 0.765957446808511 84 36 76.6 0 278 27 4 87 RYD63601.1 MAG: hypothetical protein EOP83_11820, partial [Verrucomicrobiaceae bacterium] diamond 252 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31736368 31736368 PRJNA561138_P_NODE_28237_length_244_cov_0.900585_g28042_i0 PRJNA561138 28237 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 75.1 1.24e-13   NR MBX7123184.1 2006848 g28042 i0 49.4 1.89344262295082 81 37 94.7 2 5 235 23 103 MBX7123184.1 hypothetical protein [Opitutaceae bacterium] diamond 462 75.5 0.994701986754967 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32165707 32165707 PRJNA561138_P_NODE_28098_length_245_cov_0.895349_g27903_i0 PRJNA561138 28098 245 0.895349 2.19360505 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 123 3.39e-31   NR RYD66268.1 2026800 g27903 i0 67.9 1.98367346938776 81 26 99.2 0 1 243 137 217 RYD66268.1 MAG: hypothetical protein EOP83_05490 [Verrucomicrobiaceae bacterium] diamond 486 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
32891520 32891520 PRJNA561138_P_NODE_20540_length_285_cov_1.089623_g20345_i0 PRJNA561138 20540 285 1.089623 3.10542555 Verrucomicrobiota bacterium JB025 3064554 Bacteria Bacteria 114 1.05e-29   NR MDP0503144.1 3064554 g20345 i0 60.9 0.968421052631579 92 36 96.8 0 282 7 48 139 MDP0503144.1 PEP-CTERM sorting domain-containing protein [Verrucomicrobiota bacterium JB025] diamond 276 114 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium JB025

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;