RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA561138" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA561138 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13884463 13884463 PRJNA561138_P_NODE_15291_length_335_cov_34.721374_g15096_i0 PRJNA561138 15291 335 34.721374 116.3166029 Bacillales 1385 Bacteria Bacteria 278 4.79e-70   NTclustered gi|1348914887|gb|MG983975.1| 1409 g15096 i0 100 104.331343283582 150 0 90 0 1 150 295 444 Bacillus sp. (in: Bacteria) strain B7 16S ribosomal RNA gene, partial sequence blastn 34951 278 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. (in: firmicutes)
15158650 15158650 PRJNA561138_P_NODE_15112_length_337_cov_1.477273_g14917_i0 PRJNA561138 15112 337 1.477273 4.97841001 Streptococcus 1301 Bacteria Bacteria 606 5.409999999999998e-169   NTclustered gi|1948603152|gb|CP066021.1| 1303 g14917 i0 99.11 339.00296735905 337 3 100 0 1 337 673574 673238 Streptococcus oralis strain FDAARGOS_1020 chromosome, complete genome blastn 114244 612 0.990196078431373 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis
15847947 15847947 PRJNA561138_P_NODE_25093_length_250_cov_0.870056_g24898_i0 PRJNA561138 25093 250 0.870056 2.17514 Veillonella rogosae 423477 Bacteria Bacteria 429 8.949999999999998e-116   NTclustered gi|2446175566|gb|CP117967.1| 423477 g24898 i0 97.6 4.784 250 6 100 0 1 250 942366 942117 Veillonella rogosae strain AC2811 AN NA 2 chromosome, complete genome blastn 1196 429 1 Bacteria   Bacillati Bacillota Negativicutes Veillonellales Veillonellaceae Veillonella Veillonella rogosae
16433306 16433306 PRJNA561138_P_NODE_15293_length_335_cov_6.480916_g15098_i0 PRJNA561138 15293 335 6.480916 21.7110686 root 1 Root_unresolved Root_unresolved 278 4.79e-70   NTclustered gi|1002357967|gb|KU738862.1| 1390 g15098 i0 100 98.1970149253731 150 0 80 0 186 335 656 805 Bacillus amyloliquefaciens strain AZB42 16S ribosomal RNA gene, partial sequence blastn 32896 278 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus amyloliquefaciens
27995133 27995133 PRJNA561138_P_NODE_13045_length_362_cov_1.093426_g12850_i0 PRJNA561138 13045 362 1.093426 3.95820212 Bacillus sp. FSL W8- 2954627 Bacteria Bacteria 147 7.2e-40   NR WP_341026961.1 2954627 g12850 i0 61 3.90331491712707 118 45 97 1 1 351 311 428 WP_341026961.1 restriction endonuclease [Bacillus sp. FSL W8-0645] diamond 1413 147 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. FSL W8-0645
29257785 29257785 PRJNA561138_P_NODE_27369_length_246_cov_0.890173_g27174_i0 PRJNA561138 27369 246 0.890173 2.18982558 Bacilli bacterium 1903720 Bacteria Bacteria 64.3 9.76e-10   NR MEG1494751.1 1903720 g27174 i0 43.6 0.951219512195122 78 41 93.9 2 11 241 731 806 MEG1494751.1 hypothetical protein [Bacilli bacterium] diamond 234 64.3 1 Bacteria   Bacillati Bacillota Bacilli       Bacilli bacterium
29826225 29826225 PRJNA561138_P_NODE_12471_length_369_cov_1.135135_g12276_i0 PRJNA561138 12471 369 1.135135 4.18864815 Enterococcus faecium 1352 Bacteria Bacteria 139 6.92e-39   NR WP_230206348.1 1352 g12276 i0 94.6 0.601626016260163 74 4 60.2 0 367 146 135 208 WP_230206348.1 hypothetical protein, partial [Enterococcus faecium] diamond 222 139 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium
29857887 29857887 PRJNA561138_P_NODE_28951_length_243_cov_0.905882_g28756_i0 PRJNA561138 28951 243 0.905882 2.20129326 Candidatus Fimenecus sp. 3022888 Bacteria Bacteria 56.2 6.29e-7   NR MDY4909386.1 3022888 g28756 i0 32.6 1.09876543209877 89 50 97.5 2 4 240 116 204 MDY4909386.1 LPD28 domain-containing protein [Candidatus Fimenecus sp.] diamond 267 56.2 1 Bacteria   Bacillati Bacillota Clostridia     Candidatus Fimenecus Candidatus Fimenecus sp.
32559416 32559416 PRJNA561138_P_NODE_24519_length_251_cov_0.865169_g24324_i0 PRJNA561138 24519 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 99 3.1e-23   NR WP_209465717.1 557451 g24324 i0 58.1 4.49402390438247 74 31 88.4 0 3 224 173 246 WP_209465717.1 VOC family protein [Symbiobacterium terraclitae] diamond 1128 100 0.99 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Symbiobacteriaceae Symbiobacterium Symbiobacterium terraclitae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;