RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA561138", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA561138 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5648974 5648974 PRJNA561138_P_NODE_28705_length_243_cov_1.358824_g28510_i0 PRJNA561138 28705 243 1.358824 3.30194232 Spiroplasma sp. TIUS-1 216963 Bacteria Bacteria 121 5.92e-23   NTclustered gi|1807235618|gb|CP048387.1| 216963 g28510 i0 91.954 29.3045267489712 87 6 36 1 92 178 121475 121560 Spiroplasma sp. TIUS-1 chromosome, complete genome blastn 7121 121 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. TIUS-1
7508567 7508567 PRJNA561138_P_NODE_12806_length_365_cov_1.054795_g12611_i0 PRJNA561138 12806 365 1.054795 3.85000175 Mesomycoplasma 2923352 Bacteria Bacteria 675 0   NTclustered gi|1720621726|gb|CP035041.1| 2100 g12611 i0 100 15 365 0 100 0 1 365 643985 644349 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 5475 675 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
22807758 22807758 PRJNA561138_P_NODE_17738_length_310_cov_1.299578_g17543_i0 PRJNA561138 17738 310 1.299578 4.0286918 Mesomycoplasma 2923352 Bacteria Bacteria 568 2.3299999999999995e-157   NTclustered gi|2713084492|gb|CP150431.1| 2100 g17543 i0 100 14.941935483871 307 0 99 0 2 308 14016 13710 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 4632 568 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;