RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA561138", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA561138 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17122856 17122856 PRJNA561138_P_NODE_28854_length_243_cov_0.905882_g28659_i0 PRJNA561138 28854 243 0.905882 2.20129326 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 411 3.14e-110   NTclustered gi|10935|emb|X56693.1| 5908 g28659 i0 97.119 101.20987654321 243 7 100 0 1 243 645 403 Tetrahymena pyriformis TUF11 gene for ubiquitin-ribosomal protein fusion protein blastn 24594 411 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
27332122 27332122 PRJNA561138_P_NODE_24683_length_251_cov_0.865169_g24488_i0 PRJNA561138 24683 251 0.865169 2.17157419 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 142 4.69e-38   NR XP_001007359.2 312017 g24488 i0 91.9 0.884462151394422 74 6 88.4 0 250 29 371 444 XP_001007359.2 transmembrane protein, putative [Tetrahymena thermophila SB210] diamond 222 142 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;