RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA561138", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA561138 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8197933 8197933 PRJNA561138_P_NODE_17667_length_311_cov_1.084034_g17472_i0 PRJNA561138 17667 311 1.084034 3.37134574 Chlamydiales bacterium 2047757 Bacteria Bacteria 104 6.38e-25   NR MFT5050659.1 2047757 g17472 i0 85.2 0.520900321543408 54 8 52.1 0 103 264 205 258 MFT5050659.1 exodeoxyribonuclease-3 [Chlamydiales bacterium] diamond 162 104 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
22222056 22222056 PRJNA561138_P_NODE_14878_length_340_cov_1.153558_g14683_i0 PRJNA561138 14878 340 1.153558 3.9220972 Chlamydiales bacterium 2047757 Bacteria Bacteria 199 1.62e-58   NR MFT5052631.1 2047757 g14683 i0 81.4 3.97941176470588 113 21 99.7 0 2 340 206 318 MFT5052631.1 glutamate formiminotransferase/formiminotetrahydrofolate cyclodeaminase [Chlamydiales bacterium] diamond 1353 199 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30995407 30995407 PRJNA561138_P_NODE_9854_length_406_cov_1.618619_g9659_i0 PRJNA561138 9854 406 1.618619 6.57159314 Chlamydiales bacterium 2047757 Bacteria Bacteria 80.5 1.48e-14   NR MFT5052601.1 2047757 g9659 i0 33.6 1.96551724137931 134 89 99 0 5 406 328 461 MFT5052601.1 hypothetical protein [Chlamydiales bacterium] diamond 798 80.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31659144 31659144 PRJNA561138_P_NODE_13837_length_352_cov_1.000000_g13642_i0 PRJNA561138 13837 352 1 3.52 Chlamydiales bacterium 2047757 Bacteria Bacteria 72.4 1.43e-12   NR MFT5052469.1 2047757 g13642 i0 79.5 0.375 44 9 37.5 0 217 348 5 48 MFT5052469.1 two-component system alkaline phosphatase synthesis response regulator PhoP [Chlamydiales bacterium] diamond 132 72.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;